SecReT6
I. Summary
SecReT6 ID738 insolico
StrainEdwardsiella tarda C07-087
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020796
Location2130320..2160865
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ETAC_093152125330..2125833 [+], 5044704630333-isopropylmalate dehydratase small subunit 1, putative 
2ETAC_093202125823..2126980 [+], 1158470463034hypothetical protein 
3ETAC_093252127473..2127955 [+], 483470463035hypothetical protein 
4ETAC_093302128242..2128763 [-], 522470463036hypothetical protein 
5ETAC_093352130320..2131612 [-], 1293470463037ImpA domain-containing protein  TssA
6ETAC_093402132101..2132553 [-], 453470463038hypothetical protein  TssE
7ETAC_093452132546..2133088 [-], 543470463039hypothetical protein  TssJ
8ETAC_093502133063..2134157 [-], 1095470463040hypothetical protein  TssG
9ETAC_093552134121..2135884 [-], 1764470463041type VI secretion system protein ImpG  TssF
10ETAC_093602136007..2136483 [-], 477470463042hypothetical protein 
11ETAC_093652136766..2138361 [-], 1596470463043type VI secretion system protein VasJ  TssA
12ETAC_093702138361..2141612 [-], 3252470463044hypothetical protein  TssM
13ETAC_093752141767..2142921 [-], 1155470463045hypothetical protein 
14ETAC_093802142925..2143191 [-], 267470463046hypothetical protein  PAAR
15ETAC_093852143222..2143872 [-], 651470463047hypothetical protein 
16ETAC_093902144690..2145535 [-], 846470463048sulfatase modifying factor 1 precursor-like protein 
17ETAC_093952145577..2147832 [-], 2256470463049hypothetical protein 
18ETAC_094002147849..2150365 [-], 2517470463050hypothetical protein  TssI
19ETAC_094052150503..2150652 [-], 150470463051hypothetical protein 
20ETAC_094102151131..2151703 [-], 573470463052hypothetical protein 
21ETAC_094152151690..2154362 [-], 2673470463053type VI secretion ATPase, ClpV1 family protein  TssH
22ETAC_094202154536..2155027 [-], 492470463054cytoplasmic protein USSDB7A  TssD
23ETAC_094252155033..2156778 [-], 1746470463055hypothetical protein  TagL
24ETAC_094302156782..2157435 [-], 654470463056type VI secretion system protein ImpK  TssL
25ETAC_094352157432..2158769 [-], 1338470463057hypothetical protein  TssK
26ETAC_094402158788..2160329 [-], 1542470463058hypothetical protein  TssC
27ETAC_094452160368..2160865 [-], 498470463059hypothetical protein  TssB
28ETAC_094502161583..2161735 [+], 153470463060polypeptide destructive to membrane potential 
29ETAC_094552162194..2162346 [+], 153470463061Hok/gef cell toxic protein 
30ETAC_094602163078..2163626 [-], 549470463062CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 
31ETAC_09465 (uvrC)2163681..2165513 [-], 1833470463063excinuclease ABC subunit C 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ETAC_094202154536..2155027 [-], 492470463054cytoplasmic protein USSDB7A EC042_4529

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Proteins        Genes
N/A
N/A