SecReT6
I. Summary
SecReT6 ID739 insolico
StrainEdwardsiella tarda C07-087
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020796
Location2607168..2627085
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ETAC_114752602455..2602736 [-], 282470463465hypothetical protein 
2ETAC_114802602775..2603323 [-], 549470463466Putative transporting ATPase 
3ETAC_114852603424..2604224 [-], 801470463467hypothetical protein 
4ETAC_114902604528..2605757 [-], 1230470463468hypothetical protein 
5ETAC_114952606310..2606867 [+], 558470463469hypothetical protein  EvpP (e)
6ETAC_115002607168..2607632 [+], 465470463470type VI secretion system protein EvpA  TssB
7ETAC_115052607629..2609116 [+], 1488470463471type VI secretion system protein EvpB  TssC
8ETAC_115102609186..2609677 [+], 492470463472type VI secretion system protein EvpC  TssD
9ETAC_115152609777..2610997 [+], 1221470463473type VI secretion system protein EvpD 
10ETAC_115202611006..2611482 [+], 477470463474type VI secretion system protein EvpE  TssE
11ETAC_115252611486..2613327 [+], 1842470463475type VI secretion system protein EvpF  TssF
12ETAC_115302613324..2614349 [+], 1026470463476type VI secretion system protein EvpG  TssG
13ETAC_115352614501..2617080 [+], 2580470463477type VI secretion system protein EvpH  TssH
14ETAC_115402617080..2619065 [+], 1986470463478type VI secretion system protein EvpI  TssI
15ETAC_115452619206..2619463 [+], 258470463479type VI secretion system protein EvpJ  PAAR
16ETAC_115502619477..2620544 [+], 1068470463480type VI secretion system protein EvpK  TssA
17ETAC_115552620531..2621172 [+], 642470463481type VI secretion system protein EvpL  TssJ
18ETAC_115602621307..2622659 [+], 1353470463482type VI secretion system protein EvpM  TssK
19ETAC_115652622656..2623306 [+], 651470463483type VI secretion system protein EvpN  TssL
20ETAC_115702623303..2627085 [+], 3783470463484type VI secretion system protein EvpO  TssM
21ETAC_11575 (mepA)2627217..2628035 [-], 819470463485penicillin-insensitive murein endopeptidase 
22ETAC_115802628061..2629146 [-], 1086470463486Chorismate synthase AroG 
23ETAC_115852629238..2630170 [-], 933470463487N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 
24ETAC_115902630381..2630926 [+], 546470463488hypothetical protein 
25ETAC_115952630977..2631453 [-], 477470463489phosphohistidine phosphatase SixA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EvpP , EvpC, EvpI

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ETAC_114952606310..2606867 [+], 558470463469hypothetical protein EvpP
2ETAC_115102609186..2609677 [+], 492470463472type VI secretion system protein EvpC EvpC
3ETAC_115402617080..2619065 [+], 1986470463478type VI secretion system protein EvpI EvpI

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Proteins        Genes
N/A
N/A