SecReT6
I. Summary
SecReT6 ID740 insolico
StrainXanthomonas axonopodis Xac29-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020800
Location4798864..4854217
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XAC29_207054795356..4798160 [-], 2805470473917DNA polymerase I 
2XAC29_207104798237..4798527 [+], 291470473918hypothetical protein 
3XAC29_207154798864..4799907 [-], 1044470473919hypothetical protein  TssA
4XAC29_207204799957..4807084 [-], 7128470473920YapH protein 
5XAC29_207254807096..4808778 [-], 1683470473921hemolysin activator protein 
6XAC29_207304809227..4812934 [-], 3708470473922serine/threonine kinase 
7XAC29_207354812939..4813655 [-], 717470473923phosphoprotein phosphatase 
8XAC29_207404813691..4814227 [-], 537470473924hypothetical protein 
9XAC29_207454814224..4817754 [-], 3531470473925hypothetical protein  TssM
10XAC29_207504817751..4819031 [-], 1281470473926hypothetical protein  TssL
11XAC29_207554819013..4820410 [-], 1398470473927hypothetical protein  TssK
12XAC29_207604820927..4822243 [-], 1317470473928hypothetical protein  Fha
13XAC29_207654822530..4823078 [-], 549470473929hypothetical protein 
14XAC29_207704823075..4825042 [-], 1968470473930hypothetical protein  TssI
15XAC29_207754825193..4826524 [-], 1332470473931hypothetical protein 
16XAC29_207804826760..4827104 [-], 345470473932hypothetical protein  PAAR
17XAC29_207854827118..4829619 [-], 2502470473933serine/threonine kinase 
18XAC29_207904829616..4830155 [-], 540470473934extracytoplasmic sigma factor 
19XAC29_207954830429..4831031 [+], 603470473935ECF sigma factor 
20XAC29_208004831022..4832098 [+], 1077470473936transmembrane sensor 
21XAC29_208054832563..4835448 [+], 2886470473937hypothetical protein 
22XAC29_208104835455..4836837 [+], 13834704739386-phytase 
23XAC29_208154836908..4838212 [+], 1305470473939hypothetical protein 
24XAC29_208204838861..4839562 [-], 702470473940hypothetical protein 
25XAC29_208254840003..4842030 [-], 2028470473941hypothetical protein 
26XAC29_208304842308..4842577 [-], 270470473942hypothetical protein 
27XAC29_208354844397..4847177 [-], 2781470473943chaperone ClpB  TssH
28XAC29_208404847233..4848273 [-], 1041470473944hypothetical protein  TssG
29XAC29_208454848237..4850120 [-], 1884470473945hypothetical protein  TssF
30XAC29_208504850125..4850628 [-], 504470473946hypothetical protein  TssE
31XAC29_208554850634..4851428 [-], 795470473947hypothetical protein  TagJ
32XAC29_208604851627..4852130 [-], 504470473948hypothetical protein  TssD
33XAC29_208654852211..4853704 [-], 1494470473949hypothetical protein  TssC
34XAC29_208704853708..4854217 [-], 510470473950hypothetical protein  TssB
35XAC29_208754854597..4855202 [+], 606470473951transcriptional regulator 
36XAC29_208804855299..4855745 [-], 447470473952hypothetical protein 
37XAC29_208854856003..4856593 [-], 591470473953nodulation protein 
38XAC29_208904856937..4857098 [+], 162470473954hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A