I. Summary

SecReT6 ID	741
Strain	Psychromonas sp. CNPT3
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_020802
Location	1980933..2005288
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PCNPT3_08360	1976667..1977020 [-], 354	470479704	hypothetical protein
2	PCNPT3_08365	1977085..1977306 [+], 222	470479705	hypothetical protein
3	PCNPT3_08370	1977226..1978284 [-], 1059	470479706	hypothetical protein
4	PCNPT3_08375	1978286..1980034 [-], 1749	470479707	hypothetical protein
5	PCNPT3_08380	1980024..1980377 [-], 354	470479708	hypothetical protein
6	PCNPT3_08385	1980374..1980931 [-], 558	470479709	hypothetical protein
7	PCNPT3_08390	1980933..1982972 [-], 2040	470479710	vgrG protein	TssI
8	PCNPT3_08395	1983059..1983754 [-], 696	470479711	hypothetical protein	TssA
9	PCNPT3_08400	1983970..1987515 [-], 3546	470479712	IcmF-like protein	TssM
10	PCNPT3_08405	1987529..1988950 [-], 1422	470479713	hypothetical protein	TssA
11	PCNPT3_08410	1988960..1989718 [-], 759	470479714	hypothetical protein
12	PCNPT3_08415	1989718..1991274 [-], 1557	470479715	transcriptional regulator
13	PCNPT3_08420	1991281..1993992 [-], 2712	470479716	ClpV protein	TssH
14	PCNPT3_08425	1994004..1994795 [-], 792	470479717	DotU	TssL
15	PCNPT3_08430	1994799..1996133 [-], 1335	470479718	type VI secretion protein	TssK
16	PCNPT3_08435	1996136..1996609 [-], 474	470479719	hypothetical protein	TssJ
17	PCNPT3_08440	1996611..1998119 [-], 1509	470479720	type VI secretion system protein ImpI	Fha
18	PCNPT3_08445	1998128..1999135 [-], 1008	470479721	hypothetical protein	TssG
19	PCNPT3_08450	1999099..2000811 [-], 1713	470479722	type VI secretion protein	TssF
20	PCNPT3_08455	2000868..2001305 [-], 438	470479723	hypothetical protein	TssE
21	PCNPT3_08460	2001312..2002793 [-], 1482	470479724	hypothetical protein	TssC
22	PCNPT3_08465	2002841..2003350 [-], 510	470479725	hypothetical protein	TssB
23	PCNPT3_08470	2004770..2005288 [+], 519	470479726	type VI secretion system effector	TssD
24	PCNPT3_08475	2005661..2005747 [-], 87	470479727	integrase catalytic subunit
25	PCNPT3_08480	2005744..2005980 [-], 237	470479728	integrase catalytic subunit
26	PCNPT3_08485	2007569..2009590 [-], 2022	470479729	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ECA2866

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PCNPT3_08470	2004770..2005288 [+], 519	470479726	type VI secretion system effector	ECA2866

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Proteins        Genes

N/A

N/A