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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PCNPT3_08360 | 1976667..1977020 [-], 354 | 470479704 | hypothetical protein | |
2 | PCNPT3_08365 | 1977085..1977306 [+], 222 | 470479705 | hypothetical protein | |
3 | PCNPT3_08370 | 1977226..1978284 [-], 1059 | 470479706 | hypothetical protein | |
4 | PCNPT3_08375 | 1978286..1980034 [-], 1749 | 470479707 | hypothetical protein | |
5 | PCNPT3_08380 | 1980024..1980377 [-], 354 | 470479708 | hypothetical protein | |
6 | PCNPT3_08385 | 1980374..1980931 [-], 558 | 470479709 | hypothetical protein | |
7 | PCNPT3_08390 | 1980933..1982972 [-], 2040 | 470479710 | vgrG protein | TssI |
8 | PCNPT3_08395 | 1983059..1983754 [-], 696 | 470479711 | hypothetical protein | TssA |
9 | PCNPT3_08400 | 1983970..1987515 [-], 3546 | 470479712 | IcmF-like protein | TssM |
10 | PCNPT3_08405 | 1987529..1988950 [-], 1422 | 470479713 | hypothetical protein | TssA |
11 | PCNPT3_08410 | 1988960..1989718 [-], 759 | 470479714 | hypothetical protein | |
12 | PCNPT3_08415 | 1989718..1991274 [-], 1557 | 470479715 | transcriptional regulator | |
13 | PCNPT3_08420 | 1991281..1993992 [-], 2712 | 470479716 | ClpV protein | TssH |
14 | PCNPT3_08425 | 1994004..1994795 [-], 792 | 470479717 | DotU | TssL |
15 | PCNPT3_08430 | 1994799..1996133 [-], 1335 | 470479718 | type VI secretion protein | TssK |
16 | PCNPT3_08435 | 1996136..1996609 [-], 474 | 470479719 | hypothetical protein | TssJ |
17 | PCNPT3_08440 | 1996611..1998119 [-], 1509 | 470479720 | type VI secretion system protein ImpI | Fha |
18 | PCNPT3_08445 | 1998128..1999135 [-], 1008 | 470479721 | hypothetical protein | TssG |
19 | PCNPT3_08450 | 1999099..2000811 [-], 1713 | 470479722 | type VI secretion protein | TssF |
20 | PCNPT3_08455 | 2000868..2001305 [-], 438 | 470479723 | hypothetical protein | TssE |
21 | PCNPT3_08460 | 2001312..2002793 [-], 1482 | 470479724 | hypothetical protein | TssC |
22 | PCNPT3_08465 | 2002841..2003350 [-], 510 | 470479725 | hypothetical protein | TssB |
23 | PCNPT3_08470 | 2004770..2005288 [+], 519 | 470479726 | type VI secretion system effector | TssD |
24 | PCNPT3_08475 | 2005661..2005747 [-], 87 | 470479727 | integrase catalytic subunit | |
25 | PCNPT3_08480 | 2005744..2005980 [-], 237 | 470479728 | integrase catalytic subunit | |
26 | PCNPT3_08485 | 2007569..2009590 [-], 2022 | 470479729 | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein