SecReT6
I. Summary
SecReT6 ID741 insolico
StrainPsychromonas sp. CNPT3
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020802
Location1980933..2005288
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PCNPT3_083601976667..1977020 [-], 354470479704hypothetical protein 
2PCNPT3_083651977085..1977306 [+], 222470479705hypothetical protein 
3PCNPT3_083701977226..1978284 [-], 1059470479706hypothetical protein 
4PCNPT3_083751978286..1980034 [-], 1749470479707hypothetical protein 
5PCNPT3_083801980024..1980377 [-], 354470479708hypothetical protein 
6PCNPT3_083851980374..1980931 [-], 558470479709hypothetical protein 
7PCNPT3_083901980933..1982972 [-], 2040470479710vgrG protein  TssI
8PCNPT3_083951983059..1983754 [-], 696470479711hypothetical protein  TssA
9PCNPT3_084001983970..1987515 [-], 3546470479712IcmF-like protein  TssM
10PCNPT3_084051987529..1988950 [-], 1422470479713hypothetical protein  TssA
11PCNPT3_084101988960..1989718 [-], 759470479714hypothetical protein 
12PCNPT3_084151989718..1991274 [-], 1557470479715transcriptional regulator 
13PCNPT3_084201991281..1993992 [-], 2712470479716ClpV protein  TssH
14PCNPT3_084251994004..1994795 [-], 792470479717DotU  TssL
15PCNPT3_084301994799..1996133 [-], 1335470479718type VI secretion protein  TssK
16PCNPT3_084351996136..1996609 [-], 474470479719hypothetical protein  TssJ
17PCNPT3_084401996611..1998119 [-], 1509470479720type VI secretion system protein ImpI  Fha
18PCNPT3_084451998128..1999135 [-], 1008470479721hypothetical protein  TssG
19PCNPT3_084501999099..2000811 [-], 1713470479722type VI secretion protein  TssF
20PCNPT3_084552000868..2001305 [-], 438470479723hypothetical protein  TssE
21PCNPT3_084602001312..2002793 [-], 1482470479724hypothetical protein  TssC
22PCNPT3_084652002841..2003350 [-], 510470479725hypothetical protein  TssB
23PCNPT3_084702004770..2005288 [+], 519470479726type VI secretion system effector  TssD
24PCNPT3_084752005661..2005747 [-], 87470479727integrase catalytic subunit 
25PCNPT3_084802005744..2005980 [-], 237470479728integrase catalytic subunit 
26PCNPT3_084852007569..2009590 [-], 2022470479729methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PCNPT3_084702004770..2005288 [+], 519470479726type VI secretion system effector ECA2866

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Proteins        Genes
N/A
N/A