SecReT6
I. Summary
SecReT6 ID742 insolico
StrainXanthomonas citri subsp. citri Aw12879
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020815
Location191081..246435
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XCAW_00149 (wbbJ)188717..189295 [+], 579471265709Acetyltransferase (the isoleucine patch superfamily) 
2XCAW_00150 (uspA)189553..189999 [+], 447471265710Universal stress protein UspA and related nucleotide-binding protein 
3XCAW_00151 (araC)190096..190767 [-], 672471265711AraC-type DNA-binding domain-containing protein 
4XCAW_00152191081..191590 [+], 510471265712Hypothetical Protein  TssB
5XCAW_00153191594..193087 [+], 1494471265713Type VI secretion protein, EvpB/VC_A0108 family  TssC
6XCAW_00154 (hcp)193168..193671 [+], 504471265714Hemolysin-coregulated protein (uncharacterized)  TssD
7XCAW_00155193870..194664 [+], 795471265715Type VI secretion protein, ImpE/SciE family  TagJ
8XCAW_00156194670..195173 [+], 504471265716Hypothetical Protein  TssE
9XCAW_00157195178..197061 [+], 1884471265717Type VI secretion protein, VC_A0110 family  TssF
10XCAW_00158197058..198065 [+], 1008471265718Type VI secretion protein, VC_A0111 family  TssG
11XCAW_00159 (clpA)198121..200901 [+], 2781471265719ATPases with chaperone activity, ATP-binding subunit  TssH
12XCAW_00160201560..201904 [+], 345471265720Hypothetical Protein 
13XCAW_00161201965..202318 [-], 354471265721Transposase 
14XCAW_00162202683..202991 [+], 309471265722Hypothetical Protein 
15XCAW_00164202992..203396 [-], 405471265724Hypothetical Protein 
16XCAW_00163203269..205296 [+], 2028471265723Hypothetical Protein 
17XCAW_00165205704..206438 [+], 735471265725secreted protein 
18XCAW_00166207087..208454 [-], 1368471265726Hypothetical Protein 
19XCAW_00167 (appA)208462..209769 [-], 1308471265727acid phosphatase 
20XCAW_00168209851..212736 [-], 2886471265728Hypothetical Protein 
21XCAW_00169213201..214274 [-], 1074471265729Transmembrane sensor 
22XCAW_00170 (rpoE)214268..214741 [-], 474471265730RNA polymerase sigma-E factor 
23XCAW_00171215144..215683 [+], 540471265731Extracytoplasmic sigma factor 
24XCAW_00172 (pknB)215662..218181 [+], 2520471265732Serine/threonine kinase 
25XCAW_00173218294..218539 [+], 246471265733hypothetical protein  PAAR
26XCAW_00174218775..220106 [+], 1332471265734methyltransferase (contains TPR repeat) 
27XCAW_00175 (vgrG)220257..222224 [+], 1968471265735Hypothetical Protein  TssI
28XCAW_00176222263..222769 [+], 507471265736Hypothetical Protein 
29XCAW_00177223056..224372 [+], 1317471265737FHA-domain-containing protein  Fha
30XCAW_00178224952..226286 [+], 1335471265738Type VI secretion protein, VC_A0114 family  TssK
31XCAW_00179226289..227548 [+], 1260471265739Type VI secretion system OmpA/MotB family protein  TssL
32XCAW_00180227551..231075 [+], 3525471265740Hypothetical Protein  TssM
33XCAW_00181231072..231608 [+], 537471265741Hypothetical Protein 
34XCAW_00182 (ptc1)231644..232360 [+], 717471265742Phosphoprotein phosphatase 
35XCAW_00183232365..236072 [+], 3708471265743Serine/threonine kinase 
36XCAW_00184236069..236530 [+], 462471265744Hypothetical Protein 
37XCAW_00185 (fhaC)236521..238203 [+], 1683471265745Hemolysin activation 
38XCAW_00186 (fhaB)238215..245342 [+], 7128471265746hemagglutinin 
39XCAW_00187245392..246435 [+], 1044471265747Type VI secretion-associated protein, ImpA family  TssA
40XCAW_00188246758..247048 [-], 291471265748Hypothetical Protein 
41XCAW_00189 (polA)247125..249929 [+], 2805471265749DNA polymerase I - 3'-5' exonuclease 
42XCAW_00190250553..250756 [+], 204471265750Hypothetical Protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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