SecReT6
I. Summary
SecReT6 ID745 insolico
StrainThalassolituus oleivorans MIL-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020888
Location395043..423228
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1TOL_0365390505..392802 [-], 2298473827764hypothetical protein 
2TOL_0366393388..395001 [+], 1614473827765hypothetical protein  Fha
3TOL_0367395043..395576 [+], 534473827766hypothetical protein  TssJ
4TOL_0368395668..397002 [+], 1335473827767type VI secretion protein  TssK
5TOL_0369397007..397888 [+], 882473827768DotU  TssL
6TOL_0370397969..401466 [+], 3498473827769type VI secretion protein IcmF  TssM
7TOL_0371401477..402154 [+], 678473827770type VI secretion-associated protein, BMA_A0400 family 
8TOL_0372402292..403545 [+], 1254473827771type VI secretion-associated protein, ImpA family  TssA
9TOL_0373403605..404123 [+], 519473827772type VI secretion protein  TssB
10TOL_0374404123..405607 [+], 1485473827773type VI secretion protein, EvpB/family  TssC
11TOL_0375405622..407193 [+], 1572473827774type VI secretion protein, EvpB/family  TssC
12TOL_0376407195..407674 [+], 480473827775type VI secretion system lysozyme-related protein  TssE
13TOL_0377407675..409507 [+], 1833473827776type VI secretion protein, VC_A0110 family  TssF
14TOL_0378409471..410610 [+], 1140473827777hypothetical protein  TssG
15TOL_0379410673..413333 [+], 2661473827778type VI secretion ATPase, ClpV1 family  TssH
16TOL_0380413480..415174 [+], 1695473827779hypothetical protein 
17TOL_0381415472..416635 [-], 1164473827780hypothetical protein 
18TOL_0382416646..417098 [-], 453473827781hypothetical protein 
19TOL_0383417333..418427 [-], 1095473827782hypothetical protein 
20TOL_0384418430..419773 [-], 1344473827783hypothetical protein 
21TOL_0385419809..420102 [-], 294473827784paar  PAAR
22TOL_0386420106..420690 [-], 585473827785hypothetical protein 
23TOL_0387420702..422588 [-], 1887473827786hypothetical protein  TssI
24TOL_0388422740..423228 [-], 489473827787hemolysin-coregulated protein  TssD
25TOL_0389423641..424144 [-], 504473827788hypothetical protein 
26TOL_0390424418..424552 [+], 135473827789hypothetical protein 
27TOL_0391424621..425493 [+], 873473827790protein serine/threonine phosphatase 
28TOL_0392425903..427954 [+], 2052473827791TPS family secretin 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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