SecReT6
I. Summary
SecReT6 ID746 insolico
StrainPseudomonas aeruginosa B136-33
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020912
Location88502..114849
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1G655_0038083981..87079 [-], 3099478476276serine/threonine protein kinase PpkA  PpkA
2G655_0038587087..87815 [-], 729478476277putative phosphoprotein phosphatase  PppA
3G655_0039087825..88505 [-], 681478476278type VI secretion-associated protein TagF  TagF
4G655_0039588502..92035 [-], 3534478476279hypothetical protein  TssM
5G655_0040092032..93381 [-], 1350478476280hypothetical protein  TssL
6G655_0040593388..94722 [-], 1335478476281hypothetical protein  TssK
7G655_0041094738..95202 [-], 465478476282lipoprotein  TssJ
8G655_0041595247..96752 [-], 1506478476283Fha1  Fha
9G655_0042097120..98154 [+], 1035478476284hypothetical protein  TssA
10G655_0042598243..98761 [+], 519478476285hypothetical protein  TssB
11G655_0043098774..100270 [+], 1497478476286hypothetical protein  TssC
12G655_00435100346..100834 [+], 489478476287hypothetical protein  TssD
13G655_00440101062..101847 [+], 786478476288putative secretion protein  TagJ
14G655_00445101849..102358 [+], 510478476289hypothetical protein  TssE
15G655_00450102355..104214 [+], 1860478476290type VI secretion protein TssF  TssF
16G655_00455104178..105224 [+], 1047478476291hypothetical protein  TssG
17G655_00460105217..107925 [+], 2709478476292ClpA/B-type chaperone  TssH
18G655_00465107963..109903 [+], 1941478476293VgrG1  TssI
19G655_00470110018..110302 [-], 285478476294hypothetical protein  Tsi6 (i)
20G655_00475110315..110548 [-], 234478476295hypothetical protein 
21G655_00480110538..111920 [-], 1383478476296hypothetical protein  Tse6 (e)
22G655_00485111936..112370 [-], 435478476297hypothetical protein 
23G655_00490112624..114849 [+], 2226478476298hypothetical protein  TssI
24G655_00495114877..115326 [+], 450478476299hypothetical protein 
25G655_00500115343..116455 [+], 1113478476300hypothetical protein 
26G655_00505116452..117489 [+], 10384784763013-oxoacyl-(acyl carrier protein) synthase 
27G655_00510117697..118437 [+], 741478476302hypothetical protein 
28G655_00515118448..119362 [+], 915478476303hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091, PA0093, PA0095, PA3487, PA3484, PA2774, PA2702, PA2685, PA1844

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G655_00435100346..100834 [+], 489478476287hypothetical protein PA0085
2G655_00465107963..109903 [+], 1941478476293VgrG1 PA0091
3G655_00480110538..111920 [-], 1383478476296hypothetical protein PA0093
4G655_00490112624..114849 [+], 2226478476298hypothetical protein PA0095
5G655_072751575648..1578947 [-], 3300478477653phospholipase D PA3487
6G655_072951582107..1583333 [-], 1227478477655hypothetical protein PA3484
7G655_110102362639..2363226 [+], 588478478398hypothetical protein PA2774
8G655_114752454296..2454772 [-], 477478478491hypothetical protein PA2702
9G655_115552472467..2474536 [+], 2070478478507hypothetical protein PA2685
10G655_159253528175..3528639 [+], 465478479374hypothetical protein PA1844

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Proteins        Genes

Homology Immunity protein list
PA0092, PA3485, PA2775, PA2703, Tsi5, PA1845

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G655_00470110018..110302 [-], 285478476294hypothetical protein PA0092
2G655_072901581673..1582110 [-], 438478477654hypothetical protein PA3485
3G655_110052362197..2362634 [+], 438478478397hypothetical protein PA2775
4G655_114702454053..2454286 [-], 234478478490hypothetical protein PA2703
5G655_115702478535..2478726 [+], 192478478508hypothetical protein Tsi5
6G655_159203527615..3528133 [+], 519478479373hypothetical protein PA1845

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Proteins        Genes
N/A