SecReT6
I. Summary
SecReT6 ID747 insolico
StrainPseudomonas aeruginosa B136-33
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020912
Location2892536..2912421
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1G655_131602889247..2890452 [-], 1206478478824hypothetical protein 
2G655_131652890653..2891294 [-], 642478478825putative transcriptional regulator 
3G655_131702891571..2891966 [+], 396478478826hypothetical protein 
4G655_131752891989..2892525 [-], 537478478827hypothetical protein 
5G655_131802892536..2894542 [-], 2007478478828hypothetical protein  TssI
6G655_131852894579..2895646 [-], 1068478478829hypothetical protein 
7G655_131902895685..2896110 [-], 426478478830hypothetical protein 
8G655_131952896292..2898841 [-], 2550478478831putative ClpA/B-type protease  TssH
9G655_132002898843..2899859 [-], 1017478478832hypothetical protein  TssG
10G655_132052899823..2901616 [-], 1794478478833type VI secretion protein VasA  TssF
11G655_132102901600..2902025 [-], 426478478834hypothetical protein  TssE
12G655_132152902038..2902535 [-], 498478478835hypothetical protein  TssD
13G655_132202902609..2904093 [-], 1485478478836hypothetical protein  TssC
14G655_132252904116..2904661 [-], 546478478837hypothetical protein  TssB
15G655_132302904869..2905345 [+], 477478478838hypothetical protein 
16G655_132352905444..2906736 [+], 1293478478839hypothetical protein  TssK
17G655_132402906754..2907512 [+], 759478478840type VI secretion protein DotU  TssL
18G655_132452907509..2911324 [+], 3816478478841type VI secretion protein IcmF  TssM
19G655_132502911321..2912421 [+], 1101478478842hypothetical protein  TssA
20G655_132552912531..2913616 [+], 1086478478843putative transcriptional regulator  Sfa3
21G655_132602913852..2914118 [+], 267478478844hypothetical protein 
22G655_132652914278..2914838 [+], 561478478845NADH-dependent FMN reductase MsuE 
23G655_132702914848..2915993 [+], 1146478478846methanesulfonate sulfonatase MsuD 
24G655_132752916023..2917207 [+], 1185478478847putative FMNH2-dependent monooxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G655_267955881685..5883922 [-], 2238478481538hypothetical protein PA5089

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Proteins        Genes

Homology Immunity protein list
PA5087, PA5088, PA5087

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G655_267805879050..5879931 [-], 882478481535hypothetical protein PA5087
2G655_267855879928..5880809 [-], 882478481536hypothetical protein PA5088
3G655_267905880806..5881681 [-], 876478481537hypothetical protein PA5087

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Proteins        Genes
N/A