SecReT6
I. Summary
SecReT6 ID748 insolico
StrainPseudomonas aeruginosa B136-33
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020912
Location3709883..3732310
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1G655_168053705431..3705751 [+], 321478479550hypothetical protein 
2G655_168103705808..3706365 [+], 558478479551hypothetical protein 
3G655_16815 (folE)3706443..3706988 [+], 546478479552GTP cyclohydrolase I 
4G655_168203707053..3707514 [-], 462478479553hypothetical protein 
5G655_168253707761..3708141 [+], 381478479554hypothetical protein 
6G655_168303708169..3709158 [-], 990478479555serine-threonine kinase Stk1  Stk1
7G655_168353709155..3709883 [-], 729478479556serine/threonine phosphoprotein phosphatase Stp1  Stp1
8G655_168403709883..3713410 [-], 3528478479557type VI secretion protein IcmF  TssM
9G655_168453713426..3714295 [-], 870478479558putative outer membrane protein  TssL
10G655_168503714298..3715629 [-], 1332478479559hypothetical protein  TssK
11G655_168553715626..3716132 [-], 507478479560putative lipoprotein  TssJ
12G655_168603716138..3717331 [-], 1194478479561hypothetical protein  Fha
13G655_168653717349..3717489 [-], 141478479562hypothetical protein 
14G655_168703717578..3719089 [-], 1512478479563transcriptional regulator  Sfa2
15G655_168753719100..3721727 [-], 2628478479564ClpA/B-type protease  TssH
16G655_168803721740..3722747 [-], 1008478479565hypothetical protein  TssG
17G655_168853722711..3724498 [-], 1788478479566hypothetical protein  TssF
18G655_168903724830..3725237 [-], 408478479567hypothetical protein  TssE
19G655_168953725250..3726725 [-], 1476478479568hypothetical protein  TssC
20G655_169003726754..3727260 [-], 507478479569hypothetical protein  TssB
21G655_169053727296..3728852 [-], 1557478479570hypothetical protein  TssA
22G655_169103729550..3730068 [+], 519478479571secreted protein Hcp  TssD
23G655_169153730268..3732310 [+], 2043478479572hypothetical protein  TssI
24G655_169203732366..3733040 [+], 675478479573hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PA14_43100, PSPTO_5435, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G655_169103729550..3730068 [+], 519478479571secreted protein Hcp PSPTO_5435
2G655_169253733037..3737881 [+], 4845478479574Rhs family protein PA14_43100
3G655_176603896550..3897068 [+], 519478479721secreted protein Hcp PSPTO_5435
4G655_277256089535..6090053 [-], 519478481724secreted protein Hcp PSPTO_5435

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Proteins        Genes

Homology Immunity protein list
PA3488

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G655_072701574521..1575219 [-], 699478477652hypothetical protein PA3488

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Proteins        Genes
N/A