SecReT6
I. Summary
SecReT6 ID749 insolico
StrainTaylorella asinigenitalis 14/45
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021033
Location1280860..1314297
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KUM_12351276153..1277214 [-], 1062479192286hypothetical protein 
2KUM_12361277216..1279957 [-], 2742479192287hypothetical protein 
3KUM_12371279959..1280846 [-], 888479192288hypothetical protein 
4KUM_12381280860..1281741 [-], 882479192289hypothetical protein 
5KUM_12391281749..1282624 [-], 876479192290hypothetical protein 
6KUM_12401282634..1284340 [-], 1707479192291RHS domain protein  TssI
7KUM_12411284745..1285365 [-], 621479192292hypothetical protein 
8KUM_12421285687..1288158 [+], 2472479192293TonB-dependent receptor 
9KUM_12431288237..1288941 [-], 705479192294hypothetical protein 
10KUM_12441289023..1290918 [-], 1896479192295hypothetical protein  TssF
11KUM_12451290918..1291481 [-], 564479192296lysozyme-like protein  TssE
12KUM_12461291491..1292324 [-], 834479192297ImpE-like protein  TagJ
13KUM_12471292418..1292903 [-], 486479192298hypothetical protein  TssD
14KUM_12481292972..1294465 [-], 1494479192299hypothetical protein  TssC
15KUM_12491294474..1295007 [-], 534479192300hypothetical protein  TssB
16KUM_12501295045..1296112 [-], 1068479192301hypothetical protein  TssA
17KUM_12511296202..1298994 [-], 2793479192302hypothetical protein 
18KUM_12521299000..1299722 [-], 723479192303hypothetical protein 
19KUM_12531299724..1303350 [-], 3627479192304hypothetical protein  TssM
20KUM_12541303362..1304699 [-], 1338479192305OmpA-family protein  TssL
21KUM_12551304710..1306059 [-], 1350479192306hypothetical protein  TssK
22KUM_12561306072..1306581 [-], 510479192307putative lipoprotein  TssJ
23KUM_12571306813..1307289 [+], 477479192308putative lipoprotein 
24KUM_12581307404..1309968 [+], 2565479192309FHA domain protein 
25KUM_12591310018..1312864 [-], 2847479192310Type VI secretion ClpV1 ATPase  TssH
26KUM_12601313014..1314297 [+], 1284479192311hypothetical protein  TssG
27KUM_12611314251..1315168 [-], 918479192312putative SAM-dependent methyltransferase 
28KUM_12621315216..1315917 [+], 702479192313putative phophoribosyltransferase protein 
29KUM_12631315920..1316390 [+], 471479192314rRNA methylase 
30KUM_1264 (trkH)1316394..1317866 [-], 1473479192315Trk system potassium uptake protein 
31KUM_1265 (trkA)1317875..1319251 [-], 1377479192316Trk system potassium uptake protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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