SecReT6
I. Summary
SecReT6 ID750 insolico
StrainTaylorella equigenitalis 14/56
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021036
Location1177478..1210472
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KUK_1087 (trkA)1172521..1173897 [+], 1377479197076Trk system potassium uptake protein 
2KUK_1088 (trkH)1173906..1175378 [+], 1473479197077Trk system potassium uptake protein 
3KUK_10891175385..1175855 [-], 471479197078rRNA methylase 
4KUK_10901175858..1176559 [-], 702479197079putative phophoribosyltransferase protein 
5KUK_10911176601..1177530 [+], 930479197080putative SAM-dependent methyltransferase 
6KUK_10921177478..1178581 [-], 1104479197081hypothetical protein  TssG
7KUK_10931178725..1181550 [+], 2826479197082Type VI secretion ClpV1 ATPase  TssH
8KUK_10941181700..1184351 [-], 2652479197083FHA domain protein 
9KUK_10951184466..1184942 [-], 477479197084putative lipoprotein 
10KUK_10961185172..1185681 [+], 510479197085putative lipoprotein  TssJ
11KUK_10971185694..1187046 [+], 1353479197086hypothetical protein  TssK
12KUK_10981187054..1188391 [+], 1338479197087OmpA-family protein  TssL
13KUK_10991188403..1192029 [+], 3627479197088hypothetical protein  TssM
14KUK_11001192031..1192753 [+], 723479197089hypothetical protein 
15KUK_11011192759..1193658 [+], 900479197090hypothetical protein 
16KUK_11021193661..1194212 [+], 552479197091RHS domain family protein 
17KUK_11031194231..1194623 [+], 393479197092hypothetical protein 
18KUK_11041195254..1197137 [+], 1884479197093hypothetical protein 
19KUK_11051197226..1198287 [+], 1062479197094hypothetical protein  TssA
20KUK_11061198325..1198858 [+], 534479197095hypothetical protein  TssB
21KUK_11071198867..1200360 [+], 1494479197096hypothetical protein  TssC
22KUK_11081200428..1200913 [+], 486479197097hypothetical protein  TssD
23KUK_11091201001..1201834 [+], 834479197098ImpE-like protein  TagJ
24KUK_11101201845..1202408 [+], 564479197099lysozyme-like protein  TssE
25KUK_11111202408..1204303 [+], 1896479197100hypothetical protein  TssF
26KUK_11121204383..1205087 [+], 705479197101hypothetical protein 
27KUK_11131205165..1207648 [-], 2484479197102TonB-dependent receptor 
28KUK_11141207913..1208533 [+], 621479197103hypothetical protein 
29KUK_11151208928..1210472 [+], 1545479197104Rhs family protein  TssI
30KUK_11161210498..1211364 [+], 867479197105hypothetical protein 
31KUK_11171211377..1214043 [+], 2667479197106hypothetical protein 
32KUK_11181214046..1215122 [+], 1077479197107hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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