SecReT6
I. Summary
SecReT6 ID751 insolico
StrainEnterobacter cloacae subsp. cloacae NCTC 9394
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021046
Location749102..779434
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111011
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ENC_07140744234..745580 [+], 1347479271501hypothetical protein 
2ENC_07150745668..746678 [-], 1011479271502glyceraldehyde-3-phosphate dehydrogenase 
3ENC_07160746757..747737 [-], 981479271503transcriptional regulator, AraC family with amidase-like domain 
4ENC_07170748584..749078 [+], 495479271504hypothetical protein 
5ENC_07180749102..749605 [+], 504479271505type VI secretion lipoprotein, VC_A0113 family  TssJ
6ENC_07190749634..750977 [+], 1344479271506type VI secretion protein, VC_A0114 family  TssK
7ENC_07200750995..752233 [+], 1239479271507type IV / VI secretion system protein, DotU family  TssL
8ENC_07210752236..755856 [+], 3621479271508type VI secretion protein IcmF  TssM
9ENC_07220755873..756589 [+], 717479271509type VI secretion-associated protein, BMA_A0400 family 
10ENC_07230756601..757617 [+], 1017479271510type VI secretion-associated protein, ImpA family  TssA
11ENC_07240757681..758190 [+], 510479271511type VI secretion protein, VC_A0107 family  TssB
12ENC_07260760431..760913 [+], 483479271512type VI secretion system effector, Hcp1 family  TssD
13ENC_07270760989..761978 [+], 990479271513hypothetical protein 
14ENC_07280761972..762388 [+], 417479271514hypothetical protein 
15ENC_07290762479..764254 [+], 1776479271515type VI secretion system FHA domain protein  Fha
16ENC_07300764251..765048 [+], 798479271516Serine/threonine protein phosphatase 
17ENC_07340767223..767786 [+], 564479271517type VI secretion system lysozyme-related protein  TssE
18ENC_07350767789..769660 [+], 1872479271518type VI secretion protein, VC_A0110 family  TssF
19ENC_07360769657..770700 [+], 1044479271519type VI secretion protein, VC_A0111 family  TssG
20ENC_07370770727..773354 [+], 2628479271520type VI secretion ATPase, ClpV1 family  TssH
21ENC_07380773379..774812 [+], 1434479271521Serine/threonine protein kinase 
22ENC_07410776568..777314 [+], 747479271522hypothetical protein 
23ENC_07420777512..779434 [+], 1923479271523type VI secretion system Vgr family protein  TssI
24ENC_07430779510..779950 [+], 441479271524hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ENC_07260760431..760913 [+], 483479271512type VI secretion system effector, Hcp1 family SMA2263

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Proteins        Genes
N/A
N/A