SecReT6
I. Summary
SecReT6 ID753 insolico
StrainAzotobacter vinelandii CA
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021149
Location2722456..2743766
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AvCA_265602717535..2718167 [-], 633482896656hypothetical protein 
2AvCA_265702718218..2719249 [-], 1032482896655Pentapeptide repeat protein 
3AvCA_265802719273..2721891 [-], 2619482896654Pentapeptide repeat protein 
4AvCA_265902721893..2722243 [-], 351482896653hypothetical protein 
5AvCA_266002722456..2724519 [-], 2064482896652Rhs element Vgr protein  TssI
6AvCA_266102724524..2727184 [-], 2661482896651ClpA/B-type protease  TssH
7AvCA_266202727177..2728190 [-], 1014482896650hypothetical protein  TssG
8AvCA_266302728214..2730076 [-], 1863482896649hypothetical protein  TssF
9AvCA_266402730076..2730618 [-], 543482896648hypothetical protein  TssE
10AvCA_266502730721..2731203 [-], 483482896647hypothetical protein  TssD
11AvCA_266602731262..2732764 [-], 1503482896646hypothetical protein  TssC
12AvCA_266702732778..2733344 [-], 567482896645hypothetical protein (UCP028301)  TssB
13AvCA_266802733420..2734454 [-], 1035482896644ImpA domain-containing protein  TssA
14AvCA_266902734463..2736241 [-], 1779482896643Protein kinase 
15AvCA_267002736241..2736939 [-], 699482896642hypothetical protein 
16AvCA_267102736936..2740553 [-], 3618482896641hypothetical protein  TssM
17AvCA_267202740550..2741842 [-], 1293482896640hypothetical protein  TssL
18AvCA_267302741824..2743191 [-], 1368482896639hypothetical protein  TssK
19AvCA_267402743188..2743766 [-], 579482896638hypothetical protein  TssJ
20AvCA_267602744153..2744473 [+], 321482894948hypothetical protein 
21AvCA_267702744511..2746208 [+], 1698482894947hypothetical protein  Fha
22AvCA_267802746190..2746960 [+], 771482894946Protein phosphatase 2C-like protein 
23AvCA_267902747079..2747435 [+], 357482894945hypothetical protein 
24AvCA_268002747443..2747934 [+], 492482894944hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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