SecReT6
I. Summary
SecReT6 ID754 insolico
StrainAzotobacter vinelandii CA
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021149
Location5142553..5161476
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AvCA_50690 (modG)5138192..5138620 [+], 429482893789Mo processing, homeostasis 
2AvCA_507005138703..5139653 [+], 951482894216ABC transporter ATP binding component 
3AvCA_507105139607..5140500 [-], 894482895842ABC type tungstate transporter, permease component 
4AvCA_507205140643..5141338 [-], 696482895841ABC transporter, permease protein 
5AvCA_50730 (modA3)5141335..5142111 [-], 777482893785molybdate ABC transporter, periplasmic molybdate-binding protein 
6AvCA_507505142553..5143644 [-], 1092482895840ImpA-related protein  TssA
7AvCA_507605143660..5147478 [-], 3819482895839hypothetical protein  TssM
8AvCA_507705147475..5148239 [-], 765482895838hypothetical protein  TssL
9AvCA_507805148257..5149582 [-], 1326482895837hypothetical protein  TssK
10AvCA_507905149628..5150125 [-], 498482895836hypothetical protein 
11AvCA_508005150313..5150876 [+], 564482894215hypothetical protein  TssB
12AvCA_508105150909..5152390 [+], 1482482894214DUF877 family protein  TssC
13AvCA_508205152468..5152965 [+], 498482894213DUF796 family protein  TssD
14AvCA_508305152981..5153433 [+], 453482894212hypothetical protein  TssE
15AvCA_508405153417..5155210 [+], 1794482894211hypothetical protein  TssF
16AvCA_508505155174..5156196 [+], 1023482894210hypothetical protein  TssG
17AvCA_508605156199..5158727 [+], 2529482894209AAA ATPase  TssH
18AvCA_508705159470..5161476 [+], 2007482894208Rhs element Vgr protein  TssI
19AvCA_508805161487..5162032 [+], 546482894207hypothetical protein 
20AvCA_508905162029..5162361 [-], 333482895835hypothetical protein 
21AvCA_509005162608..5163003 [-], 396482895834nitrogen fixation-related protein 
22AvCA_50910 (nafY)5163000..5163731 [-], 732482893823Nitrogen fixation-related protein, gamma subunit 
23AvCA_50920 (rnfH)5163756..5164016 [-], 261482894019Electron transport complex, RnfABCDGE type, H subunit 
24AvCA_50930 (rnfE1)5164038..5164754 [-], 717482894016Electron transport complex, RnfABCDGE type, E subunit 
25AvCA_50940 (rnfG1)5164768..5165457 [-], 690482894018Electron transport complex, RnfABCDGE type, G subunit 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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