SecReT6
I. Summary
SecReT6 ID755 insolico
StrainAzotobacter vinelandii CA6
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021150
Location2722444..2743754
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AvCA6_265602717523..2718155 [-], 633482900852hypothetical protein 
2AvCA6_265702718206..2719237 [-], 1032482900853Pentapeptide repeat protein 
3AvCA6_265802719261..2721879 [-], 2619482900854Pentapeptide repeat protein 
4AvCA6_265902721881..2722231 [-], 351482900855hypothetical protein 
5AvCA6_266002722444..2724507 [-], 2064482900856Rhs element Vgr protein  TssI
6AvCA6_266102724512..2727172 [-], 2661482900857ClpA/B-type protease  TssH
7AvCA6_266202727165..2728178 [-], 1014482900858hypothetical protein  TssG
8AvCA6_266302728202..2730064 [-], 1863482900859hypothetical protein  TssF
9AvCA6_266402730064..2730606 [-], 543482900860hypothetical protein  TssE
10AvCA6_266502730709..2731191 [-], 483482900861hypothetical protein  TssD
11AvCA6_266602731250..2732752 [-], 1503482900862hypothetical protein  TssC
12AvCA6_266702732766..2733332 [-], 567482900863hypothetical protein (UCP028301)  TssB
13AvCA6_266802733408..2734442 [-], 1035482900864ImpA domain-containing protein  TssA
14AvCA6_266902734451..2736229 [-], 1779482900865Protein kinase 
15AvCA6_267002736229..2736927 [-], 699482900866hypothetical protein 
16AvCA6_267102736924..2740541 [-], 3618482900867hypothetical protein  TssM
17AvCA6_267202740538..2741830 [-], 1293482900868hypothetical protein  TssL
18AvCA6_267302741812..2743179 [-], 1368482900869hypothetical protein  TssK
19AvCA6_267402743176..2743754 [-], 579482900870hypothetical protein  TssJ
20AvCA6_267602744141..2744461 [+], 321482900871hypothetical protein 
21AvCA6_267702744499..2746196 [+], 1698482900872hypothetical protein  Fha
22AvCA6_267802746178..2746948 [+], 771482900873Protein phosphatase 2C-like protein 
23AvCA6_267902747067..2747423 [+], 357482900874hypothetical protein 
24AvCA6_268002747431..2747922 [+], 492482900875hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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