SecReT6
I. Summary
SecReT6 ID760 insolico
StrainBurkholderia thailandensis MSMB121
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021174
Location1286631..1308146
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BTI_46151281918..1282298 [-], 381488606779hypothetical protein 
2BTI_46161282312..1282971 [-], 660488605865hypothetical protein 
3BTI_46171283043..1284125 [-], 1083488606730pentapeptide repeats family protein 
4BTI_46181284122..1286599 [-], 2478488606682pentapeptide repeats family protein 
5BTI_46191286631..1288919 [-], 2289488606945Rhs element Vgr family protein  TssI
6BTI_46201288990..1290090 [-], 1101488606832impA-related N-terminal family protein  TssA
7BTI_46211290087..1291178 [-], 1092488607122hypothetical protein  TssG
8BTI_46221291178..1293067 [-], 1890488606465hypothetical protein  TssF
9BTI_46231293096..1293677 [-], 582488606292lysozyme family protein  TssE
10BTI_46241293664..1294014 [-], 351488606370impE family protein  TagJ
11BTI_46251294011..1294733 [-], 723488605610hypothetical protein 
12BTI_4626 (clpV)1295264..1297975 [+], 2712488606906type VI secretion ATPase, ClpV1 family  TssH
13BTI_46271298009..1298590 [+], 582488607433hypothetical protein  TssB
14BTI_46281298624..1300123 [+], 1500488606934hypothetical protein  TssC
15BTI_4629 (hcp1)1300240..1300725 [+], 486488607525protein hcp1  TssD
16BTI_46301300821..1301324 [+], 504488605432type VI secretion lipofamily protein  TssJ
17BTI_46311301346..1302692 [+], 1347488606499hypothetical protein  TssK
18BTI_46321302781..1304055 [+], 1275488607242type VI secretion system OmpA/MotB family protein  TssL
19BTI_46331304085..1308146 [+], 4062488605363intracellular multiplication and macrophage-killing family protein  TssM
20BTI_46341308257..1308553 [-], 297488605587hypothetical protein 
21BTI_46351308927..1310843 [-], 1917488606626SMP-30/Gluconolaconase/LRE-like region family protein 
22BTI_46361311460..1312221 [+], 762488607024short chain dehydrogenase family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SciK

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BTI_4629(hcp1)1300240..1300725 [+], 486488607525protein hcp1 SciK

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Proteins        Genes
N/A
N/A