SecReT6
I. Summary
SecReT6 ID761 insolico
StrainBurkholderia thailandensis MSMB121
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021174
Location1631925..1654345
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BTI_49051627085..1627243 [-], 159488605925aldehyde dehydrogenase family protein 
2BTI_49061627494..1629395 [+], 1902488607179transglutaminase-like superfamily protein 
3BTI_49071629447..1630814 [-], 1368488606190FHA domain protein  Fha
4BTI_49081630869..1631240 [-], 372488605386hypothetical protein 
5BTI_49091631925..1632443 [+], 519488606914type VI secretion lipofamily protein  TssJ
6BTI_49101632440..1633822 [+], 1383488606092hypothetical protein  TssK
7BTI_49111633838..1635151 [+], 1314488605448type VI secretion system OmpA/MotB family protein  TssL
8BTI_49121635154..1638783 [+], 3630488605700intracellular multiplication and macrophage-killing family protein  TssM
9BTI_49131638780..1639637 [+], 858488607090hypothetical protein 
10BTI_49141639826..1641955 [+], 2130488606641tyrosine kinase family protein 
11BTI_49151642008..1643096 [+], 1089488606693impA-related N-terminal family protein  TssA
12BTI_49161643159..1643740 [+], 582488606892hypothetical protein  TssB
13BTI_49171643733..1645241 [+], 1509488605583hypothetical protein  TssC
14BTI_49181645302..1645793 [+], 492488607213hypothetical protein  TssD
15BTI_49191645854..1646372 [+], 519488605558lysozyme family protein  TssE
16BTI_49201646377..1648248 [+], 1872488607087hypothetical protein  TssF
17BTI_49211648245..1649474 [+], 1230488607452hypothetical protein  TssG
18BTI_4922 (clpV)1649487..1652144 [+], 2658488607023type VI secretion ATPase, ClpV1 family  TssH
19BTI_49231652141..1654345 [+], 2205488607407Rhs element Vgr family protein  TssI
20BTI_49241654403..1655626 [+], 1224488605507hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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