SecReT6
I. Summary
SecReT6 ID762 insolico
StrainBurkholderia thailandensis MSMB121
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021174
Location2166550..2192806
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BTI_53412161899..2162672 [-], 7744886073402OG-Fe(II) oxygenase superfamily protein 
2BTI_53422162669..2163358 [-], 690488607289CDP-alcohol phosphatidyltransferase family protein 
3BTI_53432163721..2165235 [+], 1515488605726succinate CoA transferase family protein 
4BTI_53442166550..2167491 [+], 942488605513impA-related N-terminal family protein  TssA
5BTI_53452167525..2168076 [+], 552488605500hypothetical protein  TssB
6BTI_53462168073..2169584 [+], 1512488605431hypothetical protein  TssC
7BTI_53472169728..2170255 [+], 528488607428hypothetical protein  TssD
8BTI_53482170334..2170765 [+], 432488606192lysozyme family protein  TssE
9BTI_53492170779..2172638 [+], 1860488607077hypothetical protein  TssF
10BTI_53502172635..2173624 [+], 990488606538hypothetical protein  TssG
11BTI_5351 (clpV)2173627..2176479 [+], 2853488606698type VI secretion ATPase, ClpV1 family  TssH
12BTI_53522176470..2178761 [+], 2292488605412Rhs element Vgr family protein  TssI
13BTI_53532178876..2181167 [+], 2292488606974Rhs element Vgr family protein  TssI
14BTI_53542181171..2183387 [+], 2217488605525pentapeptide repeats family protein 
15BTI_53552183387..2184457 [+], 1071488606000pentapeptide repeats family protein 
16BTI_53562184460..2185158 [+], 699488605740hypothetical protein 
17BTI_53572185195..2185584 [+], 390488606759hypothetical protein 
18BTI_53582185602..2186183 [+], 582488607333type VI secretion lipofamily protein  TssJ
19BTI_53592186180..2187541 [+], 1362488605809hypothetical protein  TssK
20BTI_53602187624..2189306 [+], 1683488607260type IV/VI secretion system, DotU family domain protein  TssL
21BTI_53612189303..2192806 [+], 3504488605936intracellular multiplication and macrophage-killing family protein  TssM
22BTI_53622192865..2193224 [+], 360488605403hypothetical protein 
23BTI_53632193373..2193666 [+], 294488605502hypothetical protein 
24BTI_53642193843..2194214 [+], 372488607309hypothetical protein 
25BTI_53652194748..2195659 [+], 912488605782alpha/beta hydrolase family protein 
26BTI_53662195879..2197180 [+], 1302488605632glycosyltransferase family 28 N-terminal domain protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BTI_53472169728..2170255 [+], 528488607428hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A