SecReT6
I. Summary
SecReT6 ID764 insolico
StrainPseudomonas protegens CHA0
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021237
Location6697981..6718631
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PFLCHA0_c60370 (prkC)6693510..6696593 [-], 3084501683443serine/threonine-protein kinase PrkC  PpkA
2PFLCHA0_c60380 (prpC2)6696596..6697330 [-], 735501683444protein phosphatase PrpC  PppA
3PFLCHA0_c603906697331..6697984 [-], 654501683445hypothetical protein  TagF
4PFLCHA0_c604006697981..6701487 [-], 3507501683446hypothetical protein  TssM
5PFLCHA0_c604106701484..6702809 [-], 1326501683447OmpA family protein  TssL
6PFLCHA0_c604206702816..6704150 [-], 1335501683448hypothetical protein  TssK
7PFLCHA0_c604306704166..6704672 [-], 507501683449putative lipoprotein  TssJ
8PFLCHA0_c60440 (fha)6704737..6706221 [-], 1485501683450type VI secretion protein Fha  Fha
9PFLCHA0_c604506706626..6707633 [+], 1008501683451hypothetical protein  TssA
10PFLCHA0_c604606707715..6708230 [+], 516501683452hypothetical protein  TssB
11PFLCHA0_c604706708247..6709740 [+], 1494501683453hypothetical protein  TssC
12PFLCHA0_c60480 (hcp)6709859..6710347 [+], 489501683454protein Hcp  TssD
13PFLCHA0_c604906710475..6711023 [+], 549501683455hypothetical protein  TssE
14PFLCHA0_c605006711020..6712879 [+], 1860501683456hypothetical protein  TssF
15PFLCHA0_c605106712894..6713895 [+], 1002501683457hypothetical protein  TssG
16PFLCHA0_c60520 (clpV)6713888..6716563 [+], 2676501683458protein ClpV  TssH
17PFLCHA0_c605306716694..6718631 [+], 1938501683459Rhs-family protein  TssI
18PFLCHA0_c605406718650..6719075 [+], 426501683460hypothetical protein 
19PFLCHA0_c60550 (rhsB)6719085..6723545 [+], 4461501683461protein RhsB  PAAR
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0095 , PFL_3037, PFL_5498, PA0085, PA0091

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PFLCHA0_c303603384775..3387024 [-], 2250501680484Rhs-family protein PA0095
2PFLCHA0_c306403419539..3419994 [-], 456501680512hypothetical protein PFL_3037
3PFLCHA0_c545206071370..6071741 [+], 372501682868putative cytoplasmic protein PFL_5498
4PFLCHA0_c60480(hcp)6709859..6710347 [+], 489501683454protein Hcp PA0085
5PFLCHA0_c605306716694..6718631 [+], 1938501683459Rhs-family protein PA0091

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Proteins        Genes

Homology Immunity protein list
PFL_3036, PFL_5499

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PFLCHA0_c306303419075..3419545 [-], 471501680511putative lipoprotein PFL_3036
2PFLCHA0_c545306071752..6072201 [+], 450501682869putative periplasmic protein PFL_5499

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Proteins        Genes
N/A