SecReT6
I. Summary
SecReT6 ID766 insolico
StrainBurkholderia sp. RPE64
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_021288
Location459789..486958
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BRPE64_CCDS04540455343..456863 [+], 1521507517895Tat pathway signal sequence domain protein 
2BRPE64_CCDS04550456896..459001 [+], 2106507517896sensor histidine kinase  VirA
3BRPE64_CCDS04560458998..459732 [+], 735507517897DNA-binding response regulator VirG  VirG
4BRPE64_CCDS04570459789..461384 [+], 1596507517898type VI secretion-associated protein VC_A0119 family  TssA
5BRPE64_CCDS04580461407..465282 [-], 3876507517899lipoprotein putative  TssM
6BRPE64_CCDS04590465279..465968 [-], 690507517900hypothetical protein  TssL
7BRPE64_CCDS04600465970..467361 [-], 1392507517901hypothetical protein  TssK
8BRPE64_CCDS04610467380..468153 [-], 774507517902hypothetical protein  TssJ
9BRPE64_CCDS04620468268..469086 [-], 819507517903hypothetical protein 
10BRPE64_CCDS04630469105..471801 [-], 2697507517904pentapeptide repeat protein 
11BRPE64_CCDS04640471804..474653 [-], 2850507517905Rhs element Vgr protein  TssI
12BRPE64_CCDS04650474704..475099 [-], 396507517906hypothetical protein  PAAR
13BRPE64_CCDS04660475110..475790 [-], 681507517907lipoprotein putative 
14BRPE64_CCDS04670475831..476823 [-], 993507517908pentapeptide repeat protein 
15BRPE64_CCDS04680477014..479653 [-], 2640507517909type VI secretion ATPase ClpV1 family  TssH
16BRPE64_CCDS04690479698..480681 [-], 984507517910hypothetical protein  TssG
17BRPE64_CCDS04700480645..482369 [-], 1725507517911hypothetical protein  TssF
18BRPE64_CCDS04710482420..482818 [-], 399507517912hypothetical protein  TssE
19BRPE64_CCDS04720482857..483345 [-], 489507517913hcp protein  TssD
20BRPE64_CCDS04730483546..485033 [-], 1488507517914hypothetical protein  TssC
21BRPE64_CCDS04740485035..485484 [-], 450507517915hypothetical protein  TssB
22BRPE64_CCDS04750485786..485953 [-], 168507517916hypothetical protein 
23BRPE64_CCDS04760486007..486351 [+], 345507517917stage II sporulation protein 
24BRPE64_CCDS04770486470..486958 [+], 489507517918hcp protein  TssD
25BRPE64_CCDS04780487025..487360 [-], 336507517919stage II sporulation protein 
26BRPE64_CCDS04790487397..487810 [-], 414507517920putative anti-sigma regulatory factor serine/threonine protein kinase 
27BRPE64_CCDS04800487807..489810 [-], 2004507517921putative Serine phosphatase RsbU regulator sigma subunit 
28BRPE64_CCDS04810489836..490783 [-], 948507517922hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_II0868 , BTH_II0868

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BRPE64_CCDS04720482857..483345 [-], 489507517913hcp protein BTH_II0868
2BRPE64_CCDS04770486470..486958 [+], 489507517918hcp protein BTH_II0868

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Proteins        Genes
N/A
N/A