SecReT6
I. Summary
SecReT6 ID769 insolico
StrainFrancisella tularensis TIGB03
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016933
Location1455732..1480847
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTU_13691455732..1458194 [+], 2463379717633hypothetical protein  PdpA
2FTU_13701458199..1461480 [+], 3282379717634hypothetical protein  PdpB
3FTU_13711461470..1461847 [+], 378379717635hypothetical protein  IglE
4FTU_13721461860..1462354 [+], 495379717636hypothetical protein  VgrG
5FTU_13731462359..1464089 [+], 1731379717637DNA polymerase I  IglF
6FTU_13741464090..1464611 [+], 522379717638hypothetical protein  IglG
7FTU_13751464624..1466054 [+], 1431379717639hypothetical protein  IglH
8FTU_13761466067..1466690 [+], 624379717640hypothetical protein  DotU
9FTU_13771466712..1467863 [+], 1152379717641hypothetical protein  IglI
10FTU_13781467886..1468602 [+], 717379717642hypothetical protein  IglJ
11FTU_1379 (pdpC1)1468642..1472628 [+], 3987379717643Pathogenicity determinant protein C  PdpC
12FTU_13801472646..1473221 [+], 576379717644hypothetical protein  PdpE
13FTU_1381 (iglD1)1473228..1474424 [-], 1197379717645Intracellular growth locus subunit D  IglD
14FTU_1382 (iglC1)1474445..1475074 [-], 630379717646Intracellular growth locus subunit C  IglC
15FTU_1383 (iglB1)1475091..1476611 [-], 1521379717647hypothetical protein  IglB
16FTU_1384 (iglA1)1476625..1477179 [-], 555379717648hypothetical protein  IglA
17FTU_1385 (pdpD1)1477260..1480847 [-], 3588379717649Pathogenicity determinant protein D  PdpD
 

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTU_13721461860..1462354 [+], 495379717636hypothetical protein FTT_1347
2FTU_13771466712..1467863 [+], 1152379717641hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A