SecReT6
I. Summary
SecReT6 ID770 insolico
StrainFrancisella tularensis TIGB03
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016933
Location1849030..1874145
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTU_17031849030..1851492 [+], 2463379717934hypothetical protein  PdpA
2FTU_17041851497..1854778 [+], 3282379717935hypothetical protein  PdpB
3FTU_17051854768..1855145 [+], 378379717936hypothetical protein  IglE
4FTU_17061855158..1855652 [+], 495379717937hypothetical protein  VgrG
5FTU_17071855657..1857387 [+], 1731379717938DNA polymerase I  IglF
6FTU_17081857388..1857909 [+], 522379717939hypothetical protein  IglG
7FTU_17091857922..1859352 [+], 1431379717940hypothetical protein  IglH
8FTU_17101859365..1859988 [+], 624379717941hypothetical protein  DotU
9FTU_17111860010..1861161 [+], 1152379717942hypothetical protein  IglI
10FTU_17121861184..1861900 [+], 717379717943hypothetical protein  IglJ
11FTU_1713 (pdpC2)1861940..1865926 [+], 3987379717944Pathogenicity determinant protein C  PdpC
12FTU_17141865944..1866519 [+], 576379717945hypothetical protein  PdpE
13FTU_1715 (iglD2)1866526..1867722 [-], 1197379717946Intracellular growth locus subunit D  IglD
14FTU_1716 (iglC2)1867743..1868372 [-], 630379717947Intracellular growth locus subunit C  IglC
15FTU_1717 (iglB2)1868389..1869909 [-], 1521379717948hypothetical protein  IglB
16FTU_1718 (iglA2)1869923..1870477 [-], 555379717949hypothetical protein  IglA
17FTU_1719 (pdpD2)1870558..1874145 [-], 3588379717950Pathogenicity determinant protein D  PdpD
18FTU_17211875598..1876404 [+], 807379717951putative trehalose permease MFS family FucP subfamily 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTU_17061855158..1855652 [+], 495379717937hypothetical protein FTT_1347
2FTU_17111860010..1861161 [+], 1152379717942hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A