SecReT6
I. Summary
SecReT6 ID771 insolico
StrainFrancisella tularensis subsp. tularensis TI0902
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016937
Location1379825..1404940
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTV_12851379825..1382287 [+], 2463379726237hypothetical protein  PdpA
2FTV_12861382292..1385573 [+], 3282379726238hypothetical protein  PdpB
3FTV_12871385563..1385940 [+], 378379726239hypothetical protein  IglE
4FTV_12881385953..1386447 [+], 495379726240hypothetical protein  VgrG
5FTV_12891386452..1388182 [+], 1731379726241DNA polymerase I  IglF
6FTV_12901388183..1388704 [+], 522379726242hypothetical protein  IglG
7FTV_12911388717..1390147 [+], 1431379726243hypothetical protein  IglH
8FTV_12921390160..1390783 [+], 624379726244hypothetical protein  DotU
9FTV_12931390805..1391956 [+], 1152379726245hypothetical protein  IglI
10FTV_12941391979..1392695 [+], 717379726246hypothetical protein  IglJ
11FTV_1295 (pdpC1)1392735..1396721 [+], 3987379726247Pathogenicity determinant protein C  PdpC
12FTV_12961396739..1397314 [+], 576379726248hypothetical protein  PdpE
13FTV_1297 (iglD1)1397321..1398517 [-], 1197379726249intracellular growth locus subunit D  IglD
14FTV_1298 (iglC1)1398538..1399167 [-], 630379726250intracellular growth locus subunit C  IglC
15FTV_1299 (iglB1)1399184..1400704 [-], 1521379726251hypothetical protein  IglB
16FTV_1300 (iglA1)1400718..1401272 [-], 555379726252hypothetical protein  IglA
17FTV_1301 (pdpD1)1401353..1404940 [-], 3588379726253Pathogenicity determinant protein D  PdpD
 

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTV_12881385953..1386447 [+], 495379726240hypothetical protein FTT_1347
2FTV_12931390805..1391956 [+], 1152379726245hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A