SecReT6
I. Summary
SecReT6 ID772 insolico
StrainFrancisella tularensis subsp. tularensis TI0902
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016937
Location1773123..1798238
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTV_16181773123..1775585 [+], 2463379726537hypothetical protein  PdpA
2FTV_16191775590..1778871 [+], 3282379726538hypothetical protein  PdpB
3FTV_16201778861..1779238 [+], 378379726539hypothetical protein  IglE
4FTV_16211779251..1779745 [+], 495379726540hypothetical protein  VgrG
5FTV_16221779750..1781480 [+], 1731379726541DNA polymerase I  IglF
6FTV_16231781481..1782002 [+], 522379726542hypothetical protein  IglG
7FTV_16241782015..1783445 [+], 1431379726543hypothetical protein  IglH
8FTV_16251783458..1784081 [+], 624379726544hypothetical protein  DotU
9FTV_16261784103..1785254 [+], 1152379726545hypothetical protein  IglI
10FTV_16271785277..1785993 [+], 717379726546hypothetical protein  IglJ
11FTV_1628 (pdpC2)1786033..1790019 [+], 3987379726547Pathogenicity determinant protein C  PdpC
12FTV_16291790037..1790612 [+], 576379726548hypothetical protein  PdpE
13FTV_1630 (iglD2)1790619..1791815 [-], 1197379726549intracellular growth locus subunit D  IglD
14FTV_1631 (iglC2)1791836..1792465 [-], 630379726550intracellular growth locus subunit C  IglC
15FTV_1632 (iglB2)1792482..1794002 [-], 1521379726551hypothetical protein  IglB
16FTV_1633 (iglA2)1794016..1794570 [-], 555379726552hypothetical protein  IglA
17FTV_1634 (pdpD2)1794651..1798238 [-], 3588379726553Pathogenicity determinant protein D  PdpD
18FTV_16361799691..1800497 [+], 807379726554putative trehalose permease MFS family FucP subfamily 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTV_16211779251..1779745 [+], 495379726540hypothetical protein FTT_1347
2FTV_16261784103..1785254 [+], 1152379726545hypothetical protein FTL_0118

Download FASTA format files
Proteins        Genes
N/A
N/A