SecReT6
SecReT6
I. Summary
SecReT6 ID774 insolico
StrainFrancisella cf. novicida Fx1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017450
Location1377738..1403171
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FNFX1_13471377738..1380200 [+], 2463385793279hypothetical protein  PdpA
2FNFX1_13481380205..1383486 [+], 3282385793280hypothetical protein  PdpB
3FNFX1_13491383554..1383853 [+], 300385793281hypothetical protein  IglE
4FNFX1_13501383866..1384360 [+], 495385793282hypothetical protein  VgrG
5FNFX1_13511384365..1386095 [+], 1731385793283hypothetical protein  IglF
6FNFX1_13521386096..1386617 [+], 522385793284hypothetical protein  IglG
7FNFX1_13531386630..1388060 [+], 1431385793285hypothetical protein  IglH
8FNFX1_13541388073..1388696 [+], 624385793286hypothetical protein  DotU
9FNFX1_13551388718..1389869 [+], 1152385793287hypothetical protein  IglI
10FNFX1_13561389892..1390608 [+], 717385793288hypothetical protein  IglJ
11FNFX1_13571390648..1394625 [+], 3978385793289hypothetical protein  PdpC
12FNFX1_13581394643..1395218 [+], 576385793290hypothetical protein  PdpE
13FNFX1_13591395401..1396597 [-], 1197385793291hypothetical protein  IglD
14FNFX1_13601396618..1397247 [-], 630385793292hypothetical protein  IglC
15FNFX1_13611397265..1398785 [-], 1521385793293hypothetical protein  IglB
16FNFX1_13621398799..1399353 [-], 555385793294hypothetical protein  IglA
17FNFX1_13631399434..1403171 [-], 3738385793295hypothetical protein  PdpD
18FNFX1_13641403272..1404387 [-], 1116385793296hypothetical protein 
19FNFX1_13651404552..1405760 [+], 1209385793297hypothetical protein 
20FNFX1_13661405762..1407216 [+], 1455385793298hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTN_1312 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FNFX1_13501383866..1384360 [+], 495385793282hypothetical protein FTN_1312
2FNFX1_13551388718..1389869 [+], 1152385793287hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A