SecReT6
I. Summary
SecReT6 ID775 insolico
StrainFrancisella tularensis subsp. tularensis NE061598
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017453
Location1312726..1337841
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1NE061598_074451312726..1315188 [+], 2463385795052hypothetical protein  PdpA
2NE061598_074501315193..1318474 [+], 3282385795053hypothetical protein  PdpB
3NE061598_074551318464..1318841 [+], 378385795054lipoprotein  IglE
4NE061598_074601318854..1319348 [+], 495385795055hypothetical protein  VgrG
5NE061598_074651319341..1321083 [+], 1743385795056hypothetical protein  IglF
6NE061598_074701321084..1321605 [+], 522385795057hypothetical protein  IglG
7NE061598_074751321618..1323048 [+], 1431385795058hypothetical protein  IglH
8NE061598_074801323061..1323684 [+], 624385795059developmental protein, putative  DotU
9NE061598_074851323706..1324857 [+], 1152385795060hypothetical protein  IglI
10NE061598_074901324823..1325596 [+], 774385795061hypothetical protein  IglJ
11NE061598_074951325636..1329622 [+], 3987385795062hypothetical protein  PdpC
12NE061598_075001329640..1330215 [+], 576385795063hypothetical protein  PdpE
13NE061598_075051330222..1331418 [-], 1197385795064intracellular growth locus, subunit D  IglD
14NE061598_075101331439..1332068 [-], 630385795065intracellular growth locus, subunit C  IglC
15NE061598_075151332085..1333605 [-], 1521385795066intracellular growth locus, subunit B  IglB
16NE061598_075201333619..1334173 [-], 555385795067intracellular growth locus, subunit A  IglA
17NE061598_075251334254..1337841 [-], 3588385795068pathogenicity determinant protein D, pdpD  PdpD
18NE061598_075501340197..1340613 [-], 417385795069transposase 
19NE061598_075551340601..1340981 [-], 381385795070transposase 
20NE061598_075601341144..1341386 [+], 243385795071Fucose permease-like protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTT_1347 , FTL_0118

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1NE061598_074601318854..1319348 [+], 495385795055hypothetical protein FTT_1347
2NE061598_074851323706..1324857 [+], 1152385795060hypothetical protein FTL_0118

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Proteins        Genes
N/A
N/A