SecReT6
I. Summary
SecReT6 ID777 insolico
StrainFrancisella noatunensis subsp. orientalis str. Toba 04
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017909
Location924042..944724
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111110111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number10011111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1OOM_0927921590..921757 [-], 168387886569Major Facilitator Superfamily 
2OOM_0928922005..922676 [-], 672387886570Major Facilitator Superfamily 
3OOM_0929922852..923997 [+], 1146387886571AnmK 
4OOM_0930924042..927812 [+], 3771387886572hypothetical protein  PdpD
5OOM_0931927880..928422 [+], 543387886573intracellular growth locus protein A  IglA
6OOM_0932928456..929976 [+], 1521387886574intracellular growth locus protein B  IglB
7OOM_0933929994..930623 [+], 630387886575intracellular growth locus, subunit C  IglC
8OOM_0934930647..931843 [+], 1197387886576intracellular growth locus protein D  IglD
9OOM_0935931927..932574 [-], 648387886577hypothetical protein  IglJ
10OOM_0936932592..933788 [-], 1197387886578transketolase  IglI
11OOM_0937933803..934423 [-], 621387886579hypothetical protein  DotU
12OOM_0938934438..935865 [-], 1428387886580hypothetical protein  IglH
13OOM_0939935911..936183 [+], 273387886581hypothetical protein 
14OOM_0940936691..938109 [-], 1419387886582235 kDa-family protein  IglF
15OOM_0941938115..938609 [-], 495387886583hypothetical protein  VgrG
16OOM_0942938622..938999 [-], 378387886584hypothetical protein  IglE
17OOM_0943938989..942015 [-], 3027387886585MMS1, Mono-functional DNA-alkylating agent methyl  PdpB
18OOM_0944942262..944724 [-], 2463387886586pathogenicity determinant protein pdpA1  PdpA
19OOM_0945945177..945629 [-], 453387886587hypothetical protein 
20OOM_0946946030..946353 [+], 324387886588hypothetical protein 
21OOM_0947946559..946762 [+], 204387886589XRE family transcriptional regulator 
22OOM_0948946980..947189 [+], 210387886590phosphodiesterase 
23OOM_0949947612..948658 [-], 1047387886591Holliday junction DNA helicase 
24OOM_0950948876..949478 [+], 603387886592hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTN_1312

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1OOM_0941938115..938609 [-], 495387886583hypothetical protein FTN_1312

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Proteins        Genes
N/A
N/A