SecReT6
I. Summary
SecReT6 ID78 insolico
StrainPhotobacterium profundum SS9
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_006370
Location716760..751056
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PBPRA0648711865..712689 [-], 82554307851hypothetical protein 
2PBPRA0649712682..714016 [-], 133554307852hypothetical protein 
3PBPRA0650714004..714702 [-], 69954307853ABC transporter ATP-binding protein 
4PBPRA0651714789..715487 [-], 69954307854hypothetical protein 
5PBPRA0652715750..716688 [+], 93954307855hypothetical protein 
6PBPRA0653716760..717380 [-], 62154307856hypothetical protein 
7PBPRA0654717589..718539 [+], 95154307857hypothetical protein 
8PBPRA0655718443..718889 [+], 44754307858hypothetical protein 
9PBPRA0656719070..719549 [+], 48054307859hypothetical protein 
10PBPRA0657719613..721811 [-], 219954307860serine/threonine protein kinase 
11PBPRA0658721945..723255 [+], 131154307861hypothetical protein  Fha
12PBPRA0659723258..723725 [+], 46854307862hypothetical protein  TssJ
13PBPRA0660723881..725206 [+], 132654307863hypothetical protein  TssK
14PBPRA0661725233..726552 [+], 132054307864hypothetical protein  TssL
15PBPRA0662726552..730097 [+], 354654307865hypothetical protein  TssM
16PBPRA0663730052..730765 [+], 71454307866hypothetical protein 
17PBPRA0664730681..731589 [+], 90954307867serine/threonine protein phosphatase 
18PBPRA0665731589..732722 [+], 113454307868hypothetical protein  TssA
19PBPRA0666732758..733291 [+], 53454307869hypothetical protein  TssB
20PBPRA0667733291..734781 [+], 149154307870hypothetical protein  TssC
21PBPRA0668734842..736383 [+], 154254307871hypothetical protein  TssC
22PBPRA0669736388..737182 [+], 79554307872hypothetical protein  TagJ
23PBPRA0670737337..737672 [+], 33654307873hypothetical protein  TssE
24PBPRA0671737674..739503 [+], 183054307874hypothetical protein  TssF
25PBPRA0672739467..740471 [+], 100554307875hypothetical protein  TssG
26PBPRA0673740336..743080 [+], 274554307876ATPase with chaperone activity  TssH
27PBPRA0674743312..743791 [+], 48054307877hypothetical protein  TssD
28PBPRA0675743850..745700 [+], 185154307878hypothetical protein  TssI
29PBPRA0676745739..746029 [+], 29154307879hypothetical protein  PAAR
30PBPRA0677746042..747007 [+], 96654307880hypothetical protein 
31PBPRA0678746998..751056 [+], 405954307881nucleotidyltransferase 
32PBPRA0679751084..751689 [+], 60654307882hypothetical protein 
33PBPRA0680751807..753405 [+], 159954307883hypothetical protein 
34PBPRA0681753398..753751 [+], 35454307884hypothetical protein 
35PBPRA0682754269..754553 [+], 28554307885hypothetical protein 
36PBPRA0683754813..755766 [+], 95454307886hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PBPRA0674743312..743791 [+], 48054307877hypothetical protein VPA1027

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation