SecReT6
I. Summary
SecReT6 ID780 insolico
StrainFrancisella tularensis subsp. holarctica FSC200
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019551
Location102852..124300
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111110
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTS_009298687..99097 [-], 411422938060hypothetical protein 
2FTS_009399118..99510 [-], 393422938061hypothetical protein 
3FTS_009499733..100287 [+], 555422938062nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein 
4FTS_0097 (iglA1)102852..103406 [+], 555422938063iglA protein  IglA
5FTS_0098 (iglB1)103420..104940 [+], 1521422938064intracellular growth locus protein B  IglB
6FTS_0099 (iglC1)104957..105586 [+], 630422938065intracellular growth locus protein C  IglC
7FTS_0100 (iglD1)105607..106803 [+], 1197422938066intracellular growth locus protein D  IglD
8FTS_0101106810..107385 [-], 576422938067hypothetical protein  PdpE
9FTS_0102 (pdpC1)107403..111389 [-], 3987422938068PdpC protein  PdpC
10FTS_0103111429..112202 [-], 774422938069hypothetical protein  IglJ
11FTS_0104112168..113319 [-], 1152422938070hypothetical protein  IglI
12FTS_0105113341..113964 [-], 624422938071hypothetical protein  DotU
13FTS_0106113977..115407 [-], 1431422938072hypothetical protein  IglH
14FTS_0107115420..115941 [-], 522422938073hypothetical protein  IglG
15FTS_0109116009..117673 [-], 1665422938074hypothetical protein  IglF
16FTS_0110117678..118172 [-], 495422938075hypothetical protein  VgrG
17FTS_0111118185..118562 [-], 378422938076hypothetical protein  IglE
18FTS_0112 (pdpB1)118552..121833 [-], 3282422938077PdpB protein  PdpB
19FTS_0113 (pdpA1)121838..124300 [-], 2463422938078PdpA protein  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTL_0118 , FTT_1347

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTS_0104112168..113319 [-], 1152422938070hypothetical protein FTL_0118
2FTS_0110117678..118172 [-], 495422938075hypothetical protein FTT_1347

Download FASTA format files
Proteins        Genes
N/A
N/A