SecReT6
I. Summary
SecReT6 ID781 insolico
StrainFrancisella tularensis subsp. holarctica FSC200
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_019551
Location1099462..1120910
Comment
FunctionN/A
T6SS TypeType ii (Type FPI)
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentPdpAPdpBIglEVgrGIglFIglGIglHDotUIglI
Number111111111
ComponentIglJPdpCPdpEIglDIglCIglBIglAPdpD
Number11111110
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1FTS_11221096516..1096773 [-], 258422938850hypothetical protein 
2FTS_1125 (iglA2)1099462..1100016 [+], 555422938851iglA protein  IglA
3FTS_1126 (iglB2)1100030..1101550 [+], 1521422938852intracellular growth locus protein B  IglB
4FTS_1127 (iglC2)1101567..1102196 [+], 630422938853intracellular growth locus protein C  IglC
5FTS_1128 (iglD2)1102217..1103413 [+], 1197422938854intracellular growth locus protein D  IglD
6FTS_11291103420..1103995 [-], 576422938855hypothetical protein  PdpE
7FTS_1130 (pdpC2)1104013..1107999 [-], 3987422938856PdpC protein  PdpC
8FTS_11311108039..1108812 [-], 774422938857hypothetical protein  IglJ
9FTS_11321108778..1109929 [-], 1152422938858hypothetical protein  IglI
10FTS_11331109951..1110574 [-], 624422938859hypothetical protein  DotU
11FTS_11341110587..1112017 [-], 1431422938860hypothetical protein  IglH
12FTS_11351112030..1112551 [-], 522422938861hypothetical protein  IglG
13FTS_11371112619..1114283 [-], 1665422938862hypothetical protein  IglF
14FTS_11381114288..1114782 [-], 495422938863hypothetical protein  VgrG
15FTS_11391114795..1115172 [-], 378422938864hypothetical protein  IglE
16FTS_1140 (pdpB2)1115162..1118443 [-], 3282422938865PdpB protein  PdpB
17FTS_1141 (pdpA2)1118448..1120910 [-], 2463422938866PdpA protein  PdpA
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
FTL_0118 , FTT_1347

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1FTS_11321108778..1109929 [-], 1152422938858hypothetical protein FTL_0118
2FTS_11381114288..1114782 [-], 495422938863hypothetical protein FTT_1347

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Proteins        Genes
N/A
N/A