SecReT6
I. Summary
SecReT6 ID782 insolico
StrainRalstonia solanacearum CFBP2957
Repliconplasmid RCFBPv3_mp [Browse all T6SS(s) in this replicon]
AccessionNC_014309
Location885239..934655
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RCFBP_mp20179882599..883681 [-], 1083300697342hypothetical protein 
2RCFBP_mp20180883678..885216 [-], 1539300697343hypothetical protein 
3RCFBP_mp20181885239..888043 [-], 2805300697344conserved protein of unknown function, Rhs element Vgr related protein  TssI
4RCFBP_mp20182888104..888892 [-], 789300697345putative secretion system protein (EvpN-like)  TssL
5RCFBP_mp20183888889..890235 [-], 1347300697346hypothetical protein  TssK
6RCFBP_mp20184890290..890916 [-], 627300697347conserved exported protein of unknown function  TssJ
7RCFBP_mp20185891221..891868 [+], 648300697348conserved exported protein of unknown function, partial TRP motif 
8RCFBP_mp20186891905..892417 [+], 513300697349conserved protein of unknown function DUF770  TssB
9RCFBP_mp20187892398..893900 [+], 1503300697350hypothetical protein  TssC
10RCFBP_mp20188 (sciK)893989..894492 [+], 504300697351secretion system protein (EvpC-like), Hemolysin-coregulated protein  TssD
11RCFBP_mp20189894553..895026 [+], 474300697352putative secretion system protein (EvpE-like)  TssE
12RCFBP_mp20190895089..896939 [+], 1851300697353putative Type VI secretion protein (DUF879)  TssF
13RCFBP_mp20191896903..898006 [+], 1104300697354putative Type VI secretion protein, VC_A0111 family  TssG
14RCFBP_mp20192 (clpB)898039..900765 [+], 2727300697355Chaperone clpB  TssH
15RCFBP_mp20194903261..903572 [+], 312300697356conserved protein of unknown function, Rhs element Vgr protein domains (fragment 2) 
16RCFBP_mp20196904544..907870 [+], 3327300697357putative transmembrane protein 
17RCFBP_mp20197907912..908802 [+], 891300697358hypothetical protein 
18RCFBP_mp20198908984..909709 [+], 726300697359membrane protein of unknown function 
19RCFBP_mp20199909737..910930 [+], 1194300697360putative Rhs element VGR-related protein (fragment) 
20RCFBP_mp20200910927..912081 [+], 1155300697361hypothetical protein 
21RCFBP_mp20201912059..914839 [+], 2781300697362hypothetical protein 
22RCFBP_mp20203914852..915955 [+], 1104300697363hypothetical protein 
23RCFBP_mp20204915948..917048 [+], 1101300697364hypothetical protein 
24RCFBP_mp20205917041..918132 [+], 1092300697365hypothetical protein 
25RCFBP_mp20206918140..918220 [+], 81300697366hypothetical protein 
26RCFBP_mp20207918364..919392 [+], 1029300697367conserved membrane protein of unknown function 
27RCFBP_mp20208919564..919977 [+], 414300697368conserved exported protein of unknown function 
28RCFBP_mp20209920238..921611 [+], 1374300697369putative lipoprotein yddW precursor 
29RCFBP_mp20210921756..922835 [+], 1080300697370hypothetical protein  TssA
30RCFBP_mp20211922903..923742 [-], 840300697371putative outer membrane protein; OmpA/MotB domain  TagL
31RCFBP_mp20212923739..924725 [-], 987300697372conserved protein of unknown function (signal transduction histidine kinase domain) 
32RCFBP_mp20213924722..928651 [-], 3930300697373putative secretion system protein (EvpO-like)  TssM
33RCFBP_mp20214928695..930170 [-], 1476300697374conserved transmembrane protein of unknown function 
34RCFBP_mp20215930211..930480 [-], 270300697375conserved protein of unknown function with PAAR_motif  PAAR
35RCFBP_mp20216930520..931332 [-], 813300697376putative carboxypeptidase 
36RCFBP_mp20217931654..932412 [+], 759300697377putative transmembrane protein 
37RCFBP_mp20218932327..933253 [+], 927300697378hypothetical protein  TssI
38RCFBP_mp20219932991..934655 [+], 1665300697379hypothetical protein  TssI
39RCFBP_mp20221935815..938352 [+], 2538300697380putative Phospholipase D 
40RCFBP_mp20222938475..939476 [+], 1002300697381hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
RSp0745

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1RCFBP_mp20188(sciK)893989..894492 [+], 504300697351secretion system protein (EvpC-like), Hemolysin-coregulated protein RSp0745

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Proteins        Genes
N/A
N/A