SecReT6
I. Summary
SecReT6 ID786 insolico
StrainPseudomonas fluorescens SBW25
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012660
Location3929980..3938113
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011011110
ComponentTssGTssJTssKTssM
Number0001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PFLU35403925765..3927894 [-], 2130229590983putative EAL domain-containing signaling protein 
2PFLU35413928094..3928423 [+], 330229590984hypothetical protein 
3PFLU35423928428..3929273 [-], 846229590985putative serine/threonine-protein kinase  Stk1
4PFLU35433929270..3929983 [-], 714229590986putative protein phosphatase  Stp1
5PFLU35443929980..3932268 [-], 2289229590987hypothetical protein  TssM
6PFLU35453932284..3933030 [-], 747229590988hypothetical protein  TssL
7PFLU35463933015..3933500 [-], 486229590989hypothetical protein  TssE
8PFLU35473933515..3934990 [-], 1476229590990hypothetical protein  TssC
9PFLU35483935018..3935515 [-], 498229590991hypothetical protein  TssB
10PFLU35493935547..3937100 [-], 1554229590992hypothetical protein  TssA
11PFLU35503937598..3938113 [+], 516229590993hypothetical protein  TssD
12PFLU35513938166..3938987 [-], 822229590994putative aldo/keto reductase 
13PFLU35523939094..3939588 [+], 495229590995hypothetical protein 
14PFLU35533939672..3940871 [-], 1200229590996hypothetical protein 
15PFLU35543941000..3941815 [+], 816229590997putative hydrolase 
16PFLU35553941805..3942947 [+], 1143229590998putative two-component regulator sensor histidine kinase protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PFLU35503937598..3938113 [+], 516229590993hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
 
in_silico This literature contains bioinformatics investigation