SecReT6
I. Summary
SecReT6 ID797 insolico
StrainMyxococcus stipitatus DSM 14675
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_020126
Location3978735..4012200
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101001111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MYSTI_031473973771..3974049 [+], 279442320124hypothetical protein 
2MYSTI_031483974110..3975333 [+], 1224442320125deoxyhypusine synthase 
3MYSTI_031493975361..3975795 [+], 435442320126OsmC/Ohr family protein 
4MYSTI_031503975890..3976417 [+], 528442320127hypothetical protein 
5MYSTI_031513976496..3978502 [-], 2007442320128arginine decarboxylase 
6MYSTI_031523978735..3979802 [+], 1068442320129ATP-dependent protease ATP-binding subunit ClpX  TssH
7MYSTI_031533979792..3980559 [-], 768442320130CvpA family protein 
8MYSTI_031543980587..3981378 [-], 792442320131DnaJ domain-containing protein 
9MYSTI_031553983059..3984666 [-], 1608442320132heat shock protein 70 family protein 
10MYSTI_031563984866..3985702 [+], 837442320133class II glutamine amidotransferase domain-containing protein 
11MYSTI_031573985881..3986447 [+], 567442320134ATPase 
12MYSTI_031583986444..3987145 [+], 702442320135Ser/Thr protein kinase 
13MYSTI_031593987142..3987711 [+], 570442320136hypothetical protein 
14MYSTI_031603987708..3988199 [+], 492442320137anti-anti sigma factor protein 
15MYSTI_031613988260..3993092 [-], 4833442320138OmpA family protein 
16MYSTI_031623993089..3994516 [-], 1428442320139OmpA family protein  TagL
17MYSTI_031633994768..3996696 [+], 1929442320140hypothetical protein 
18MYSTI_031643996896..3998266 [+], 1371442320141hypothetical protein 
19MYSTI_031653998455..3999000 [-], 546442320142hypothetical protein 
20MYSTI_031663998997..4002881 [-], 3885442320143hypothetical protein  TssM
21MYSTI_031674002884..4003183 [-], 300442320144hypothetical protein 
22MYSTI_031684003194..4003832 [-], 639442320145hypothetical protein  TssL
23MYSTI_031694003834..4005480 [-], 1647442320146hypothetical protein  TssF
24MYSTI_031704005494..4006096 [-], 603442320147hypothetical protein 
25MYSTI_031714006124..4007773 [-], 1650442320148hypothetical protein 
26MYSTI_031724007770..4008171 [-], 402442320149Gpw/Gp25 family protein  TssE
27MYSTI_031734008173..4009423 [-], 1251442320150hypothetical protein  TssK
28MYSTI_031744009445..4010023 [-], 579442320151hypothetical protein 
29MYSTI_031754010067..4011557 [-], 1491442320152hypothetical protein  TssC
30MYSTI_031764011598..4012200 [-], 603442320153hypothetical protein  TssB
31MYSTI_031774012264..4013163 [-], 900442320154hypothetical protein  TssG
32MYSTI_031784013168..4014220 [-], 1053442320155hypothetical protein 
33MYSTI_031794014213..4014599 [-], 387442320156hypothetical protein 
34MYSTI_031804014794..4016521 [-], 1728442320157AMP-dependent synthetase and ligase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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