SecReT6
SecReT6 ID802 experimental
StrainVibrio anguillarum NB10
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionGQ118992
Location1..11619
CommentType VI secretion modulates quorum sensing and stress response in Vibrio anguillarum.
Functioneffector translocation
experimental Experimental investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101000000
ComponentTssGTssJTssKTssM
Number0111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1clpV (clpV)1..591 [+], 591239509131ClpV  TssH
2vtsA (vtsA)734..1888 [+], 1155239509132VtsA 
3vtsB (vtsB)1898..4093 [+], 2196239509133VtsB 
4vtsC (vtsC)4090..5223 [+], 1134239509134VtsC 
5vtsD (vtsD)5226..5921 [+], 696239509135VtsD 
6vtsE (vtsE)5955..6902 [+], 948239509136VtsE  Fha
7vtsF (vtsF)6902..7369 [+], 468239509137VtsF  TssJ
8vtsG (vtsG)7369..8685 [+], 1317239509138VtsG  TssK
9vtsH (vtsH)8693..9835 [+], 1143239509139VtsH  TssL
10vtsI (vtsI)9837..11619 [+], 1783239509140VtsI  TssM
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
   Hcp (CDQ49280)
Homology effector (effector protein label, when available)
Homology immunity protein (immunity protein label, when available)
Regulatory element identified
VanT
RegulatorDescriptionReference
VanTRepressorPMID: 19624706

RpoS
RegulatorDescriptionReference
RpoSRepressorPMID: 19624706

(1) Weber B et al. (2011). The phosphotransferase VanU represses expression of four qrr genes antagonizing VanO-mediated quorum-sensing regulation in Vibrio anguillarum. Microbiology. 157(Pt 12):3324-39. [PudMed:21948044] experimental
(2) Weber B et al. (2009). Type VI secretion modulates quorum sensing and stress response in Vibrio anguillarum. Environ Microbiol. 11(12):3018-28. [PudMed:19624706] experimental
 
experimental This literature contains experimental investigation