SecReT6
I. Summary
SecReT6 ID807 insolico
StrainAchromobacter xylosoxidans NH44784-1996
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021285
Location5474850..5513952
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1NH44784_0512715470714..5473887 [-], 3174528986875COG1526: Uncharacterized protein required for formate dehydrogenase activity 
2NH44784_0512815473871..5474857 [-], 987528986876hypothetical protein 
3NH44784_0512915474850..5477543 [-], 2694528986877VgrG protein  TssI
4NH44784_0513015477560..5480244 [-], 2685528986878ClpB protein  TssH
5NH44784_0513115480264..5481355 [-], 1092528986879Uncharacterized protein ImpH/VasB  TssG
6NH44784_0513215481328..5483166 [-], 1839528986880Protein ImpG/VasA  TssF
7NH44784_0513315483220..5483705 [-], 486528986881Uncharacterized protein ImpF  TssE
8NH44784_0513415483776..5484279 [-], 504528986882Uncharacterized protein ImpD  TssD
9NH44784_0513515484320..5485810 [-], 1491528986883Uncharacterized protein ImpC  TssC
10NH44784_0513615485803..5486327 [-], 525528986884Uncharacterized protein ImpB  TssB
11NH44784_0513715486395..5487027 [-], 633528986885FOG: TPR repeat 
12NH44784_0513815487481..5487846 [+], 366528986886hypothetical protein  TssJ
13NH44784_0513915487924..5489270 [+], 1347528986887Uncharacterized protein ImpJ/VasE  TssK
14NH44784_0514015489329..5490108 [+], 780528986888Probable transmembrane protein  TssL
15NH44784_0514115490134..5493289 [+], 3156528986889VgrG protein  TssI
16NH44784_0514215493265..5495328 [+], 2064528986890hypothetical protein 
17NH44784_0514315495309..5495950 [+], 642528986891hypothetical protein 
18NH44784_0514415495963..5496658 [-], 696528986892hypothetical protein 
19NH44784_0514515496748..5499048 [-], 2301528986893FIG00464863: hypothetical protein 
20NH44784_0514615499041..5499808 [-], 768528986894hypothetical protein 
21NH44784_0514715499813..5500790 [-], 978528986895hypothetical protein 
22NH44784_0514815500801..5503677 [-], 2877528986896VgrG protein  TssI
23NH44784_0514915503704..5504630 [-], 927528986897Tail fiber protein 
24NH44784_0515015504948..5505673 [+], 726528986898Probable transmembrane protein 
25NH44784_0515115505744..5506268 [+], 525528986899PROBABLE TRANSMEMBRANE PROTEIN 
26NH44784_0515215506256..5507143 [+], 888528986900Hypothetical Protein 
27NH44784_0515315507167..5510973 [+], 3807528986901IcmF-related protein  TssM
28NH44784_0515415510970..5511953 [+], 984528986902hypothetical protein 
29NH44784_0515515511956..5512750 [+], 795528986903hypothetical protein  TagL
30NH44784_0515615512840..5513952 [-], 1113528986904Uncharacterized protein ImpA  TssA
31NH44784_0515715514128..5514379 [+], 252528986905Orf69 
32NH44784_0515815514416..5515576 [+], 1161528986906hypothetical protein  PAAR
33NH44784_0515915515663..5515908 [+], 246528986907hypothetical protein 
34NH44784_0516015515909..5516700 [+], 792528986908Methionine aminopeptidase 
35NH44784_0516115516801..5518021 [+], 1221528986909MFS permease 
36NH44784_0516215518195..5518836 [+], 642528986910Uncharacterized glutathione S-transferase-like protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1NH44784_0513415483776..5484279 [-], 504528986882Uncharacterized protein ImpD BCAL0343

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Proteins        Genes
N/A
N/A