SecReT6
I. Summary
SecReT6 ID808 insolico
StrainPseudomonas resinovorans NBRC 106553
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021499
Location169138..198210
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PCA10_01490164315..165280 [-], 966512615802putative LysR family transcriptional regulator 
2PCA10_01500165433..166494 [+], 1062512615803putative membrane fusion protein 
3PCA10_01510166510..167538 [+], 1029512615804hypothetical protein 
4PCA10_01520167615..168586 [+], 972512615805putative sensory box protein 
5PCA10_01530169138..169641 [+], 504512615806hypothetical protein  TssB
6PCA10_01540169672..171210 [+], 1539512615807hypothetical protein  TssC
7PCA10_01550171235..172590 [+], 1356512615808hypothetical protein  TssK
8PCA10_01560172587..173267 [+], 681512615809hypothetical protein  TssL
9PCA10_01570173278..174999 [+], 1722512615810hypothetical protein  TagL
10PCA10_01580 (hcp)175013..175504 [+], 492512615811putative type VI secretion system effector Hcp  TssD
11PCA10_01590 (clpV)175600..178248 [+], 2649512615812putative type VI secretion system ATPase  TssH
12PCA10_01600178251..180644 [+], 2394512615813hypothetical protein  TssI
13PCA10_01610180634..181446 [+], 813512615814hypothetical protein 
14PCA10_01620181481..182170 [+], 690512615815hypothetical protein 
15PCA10_01630182357..182854 [+], 498512615816hypothetical protein 
16PCA10_01640183138..183488 [+], 351512615817hypothetical protein 
17PCA10_01650183457..183711 [+], 255512615818hypothetical protein 
18PCA10_01660183699..183995 [+], 297512615819hypothetical protein 
19PCA10_01670184028..184549 [+], 522512615820hypothetical protein 
20PCA10_01680184537..186906 [+], 2370512615821hypothetical protein 
21PCA10_01690186903..187166 [+], 264512615822hypothetical protein  PAAR
22PCA10_01700187163..188302 [+], 1140512615823hypothetical protein 
23PCA10_01710188322..191648 [+], 3327512615824hypothetical protein  TssM
24PCA10_01720191645..193228 [+], 1584512615825hypothetical protein  TssA
25PCA10_01730193256..195025 [+], 1770512615826hypothetical protein  TssF
26PCA10_01740195037..196083 [+], 1047512615827hypothetical protein  TssG
27PCA10_01750196064..196600 [+], 537512615828hypothetical protein  TssJ
28PCA10_01760196604..197041 [+], 438512615829hypothetical protein  TssE
29PCA10_01770197071..198210 [+], 1140512615830hypothetical protein  TssA
30PCA10_01780198457..199434 [+], 978512615831putative ABC transporter substrate-binding protein 
31PCA10_01790199507..200346 [+], 840512615832putative ABC transporter permease protein 
32PCA10_01800200349..201068 [+], 720512615833putative ABC transporter ATP-binding protein 
33PCA10_01810 (mdcA)201172..202848 [+], 1677512615834malonate decarboxylase alpha subunit 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PCA10_01580(hcp)175013..175504 [+], 492512615811putative type VI secretion system effector Hcp EC042_4529

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Proteins        Genes
N/A
N/A