SecReT6
I. Summary
SecReT6 ID809 insolico
StrainEnterobacter sp. R4-368
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021500
Location18222..59217
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1H650_0073513737..14468 [-], 732512648094flagellar brake protein YcgR 
2H650_0074014679..14933 [+], 255512648095hypothetical protein 
3H650_00745 (treA)15003..16724 [-], 1722512648096trehalase 
4H650_0075017707..18198 [+], 492512648097hypothetical protein 
5H650_0075518222..18728 [+], 507512648098hypothetical protein  TssJ
6H650_0076018753..20096 [+], 1344512648099hypothetical protein  TssK
7H650_0076520114..21352 [+], 1239512648100hypothetical protein  TssL
8H650_0077021356..24967 [+], 3612512648101type VI secretion system protein ImpL  TssM
9H650_0077524986..25696 [+], 711512648102hypothetical protein 
10H650_0078025708..26721 [+], 1014512648103hypothetical protein  TssA
11H650_0078526796..27320 [+], 525512648104hypothetical protein  TssB
12H650_0079027324..28826 [+], 1503512648105EvpB family type VI secretion protein  TssC
13H650_0079528866..29303 [+], 438512648106hypothetical protein 
14H650_0080029553..30035 [+], 483512648107hypothetical protein  TssD
15H650_0080530239..31072 [+], 834512648108hypothetical protein 
16H650_0081031076..31870 [+], 795512648109hypothetical protein 
17H650_0081531969..32805 [+], 837512648110hypothetical protein 
18H650_0082032935..34740 [+], 1806512648111signal peptide protein  Fha
19H650_0082534737..35531 [+], 795512648112PppA 
20H650_0083035552..36541 [+], 990512648113hypothetical protein 
21H650_0083536551..37363 [+], 813512648114hypothetical protein  TagJ
22H650_0084037356..37925 [+], 570512648115hypothetical protein  TssE
23H650_0084537928..39799 [+], 1872512648116type VI secretion system protein ImpG  TssF
24H650_0085039796..40839 [+], 1044512648117hypothetical protein  TssG
25H650_0085540941..43571 [+], 2631512648118ATPase AAA  TssH
26H650_0086043598..45064 [+], 1467512648119nuclease PIN 
27H650_0086545207..45584 [+], 378512648120hypothetical protein 
28H650_0087045645..47873 [+], 2229512648121hypothetical protein  TssI
29H650_0087547894..48199 [+], 306512648122hypothetical protein 
30H650_0088048635..48808 [+], 174512648123hypothetical protein 
31H650_0088548920..49294 [+], 375512648124hypothetical protein 
32H650_0089049372..49752 [+], 381512648125hypothetical protein 
33H650_0089549895..50221 [+], 327512648126hypothetical protein 
34H650_0090050387..50695 [+], 309512648127hypothetical protein 
35H650_0090551040..51438 [+], 399512648128hypothetical protein 
36H650_0091051438..51800 [+], 363512648129hypothetical protein 
37H650_0091551886..54426 [+], 2541512648130hypothetical protein 
38H650_0092054423..55508 [+], 1086512648131hypothetical protein 
39H650_0092555505..56110 [+], 606512648132TssH 
40H650_0093056115..56507 [+], 393512648133type VI secretion protein 
41H650_0093556608..59217 [+], 2610512648134hypothetical protein  TssI
42H650_0094059228..59716 [+], 489512648135hypothetical protein 
43H650_0094559720..60148 [+], 429512648136hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , ECL_01567

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1H650_0080029553..30035 [+], 483512648107hypothetical protein SMA2263
2H650_0095060162..64607 [+], 4446512648137type IV secretion protein Rhs ECL_01567

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Proteins        Genes
N/A
N/A