SecReT6
I. Summary
SecReT6 ID810 insolico
StrainEnterobacter sp. R4-368
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021500
Location2176867..2212788
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111221111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1H650_111152172010..2172702 [+], 693512650039chemotaxis protein CheY 
2H650_111202172738..2174873 [-], 2136512650040ornithine decarboxylase 
3H650_111252175273..2175989 [+], 717512650041membrane protein 
4H650_111352176453..2176563 [+], 111512650042hypothetical protein 
5H650_111402176867..2178306 [-], 1440512650043hypothetical protein  TssA
6H650_111452178683..2179132 [-], 450512650044hypothetical protein  TssE
7H650_111502179789..2181666 [-], 1878512650045hypothetical protein 
8H650_111552181666..2182187 [-], 522512650046hypothetical protein 
9H650_111602182275..2182433 [-], 159512650047hypothetical protein 
10H650_111652182433..2182954 [-], 522512650048hypothetical protein 
11H650_111702183016..2183843 [-], 828512650049hypothetical protein 
12H650_111752183846..2186182 [-], 2337512650050hypothetical protein  TssI
13H650_111802186188..2186712 [-], 525512650051hypothetical protein  TssJ
14H650_111852186745..2187824 [-], 1080512650052type VI secretion protein  TssG
15H650_111902187788..2189557 [-], 1770512650053type VI secretion protein ImpG  TssF
16H650_111952189616..2191226 [-], 1611512650054hypothetical protein  TssA
17H650_112002191227..2194607 [-], 3381512650055type VI secretion protein VasK  TssM
18H650_112052194604..2195860 [-], 1257512650056hypothetical protein 
19H650_112102196401..2197159 [-], 759512650057hypothetical protein 
20H650_112152197269..2200319 [-], 3051512650058hypothetical protein 
21H650_112202200334..2202691 [-], 2358512650059hypothetical protein  TssI
22H650_112252202764..2203579 [-], 816512650060hypothetical protein 
23H650_112302203631..2206270 [-], 2640512650061ATPase  TssH
24H650_112352206448..2206939 [-], 492512650062Hcp family type VI secretion system effector  TssD
25H650_112402206954..2208621 [-], 1668512650063hypothetical protein  TagL
26H650_112452208621..2209346 [-], 726512650064hypothetical protein  TssL
27H650_112502209343..2210692 [-], 1350512650065hypothetical protein  TssK
28H650_112552210711..2212252 [-], 1542512650066EvpB/family type VI secretion protein  TssC
29H650_112602212291..2212788 [-], 498512650067hypothetical protein  TssB
30H650_112652213065..2213697 [-], 633512650068DNA-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1H650_112352206448..2206939 [-], 492512650062Hcp family type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A