SecReT6
I. Summary
SecReT6 ID811 insolico
StrainPseudomonas putida NBRC 14164
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021505
Location2779356..2809342
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PP4_243902775232..2776197 [-], 966512685496putative transmembrane sensor 
2PP4_244002776194..2776703 [-], 510512685497putative RNA polymerase ECF-type sigma factor 
3PP4_244102776792..2779308 [-], 2517512685498putative UvrABC system protein A 
4PP4_244202779356..2780441 [-], 1086512685499putative type VI secretion system protein  TssA
5PP4_24430 (hcp)2780538..2781056 [-], 519512685500putative type VI secretion system effector Hcp  TssD
6PP4_244402781200..2783695 [-], 2496512685501putative type VI secretion system protein  TssM
7PP4_244502783692..2784600 [-], 909512685502hypothetical protein 
8PP4_244602784597..2788394 [-], 3798512685503putative type VI secretion system protein  TssM
9PP4_244702788425..2789141 [-], 717512685504putative type VI secretion system protein  TssL
10PP4_244802789138..2790481 [-], 1344512685505hypothetical protein  TssK
11PP4_244902790478..2791200 [-], 723512685506putative type VI secretion system protein  TssJ
12PP4_24500 (clpV)2791225..2793822 [-], 2598512685507putative type VI secretion system ATPase  TssH
13PP4_245102793819..2794808 [-], 990512685508hypothetical protein  TssG
14PP4_245202794853..2796673 [-], 1821512685509putative type VI secretion system protein  TssF
15PP4_245302796673..2797155 [-], 483512685510putative type VI secretion system protein  TssE
16PP4_245402797182..2798684 [-], 1503512685511hypothetical protein  TssC
17PP4_245502798699..2799274 [-], 576512685512hypothetical protein  TssB
18PP4_245602799303..2800052 [-], 750512685513hypothetical protein 
19PP4_245702800576..2801127 [-], 552512685514hypothetical protein 
20PP4_245802801116..2801475 [+], 360512685515hypothetical protein 
21PP4_245902801592..2802707 [+], 1116512685516hypothetical protein 
22PP4_246002803667..2803984 [-], 318512685517hypothetical protein 
23PP4_246102804074..2804370 [-], 297512685518hypothetical protein 
24PP4_246202804367..2804966 [-], 600512685519hypothetical protein 
25PP4_246302804993..2805304 [-], 312512685520hypothetical protein 
26PP4_246402805313..2806824 [-], 1512512685521hypothetical protein 
27PP4_246502806898..2807215 [+], 318512685522hypothetical protein 
28PP4_24660 (vgrG)2807486..2809342 [+], 1857512685523putative type VI secretion system effector VgrG  TssI
29PP4_246702809353..2809937 [+], 585512685524hypothetical protein 
30PP4_246802809971..2810435 [+], 465512685525hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PP4_24430(hcp)2780538..2781056 [-], 519512685500putative type VI secretion system effector Hcp Psyr_4965

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Proteins        Genes
N/A
N/A