SecReT6
I. Summary
SecReT6 ID812 insolico
StrainPseudomonas aeruginosa RP73
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021577
Location92525..118557
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M062_0038587998..91102 [-], 3105514412673serine/threonine protein kinase  PpkA
2M062_0039091110..91838 [-], 729514407704PppA  PppA
3M062_0039591848..92528 [-], 681514407705type VI secretion system protein ImpM  TagF
4M062_0040092525..96055 [-], 3531514407706type VI secretion protein IcmF  TssM
5M062_0040596052..97401 [-], 1350514407707type VI secretion protein  TssL
6M062_0041097408..98742 [-], 1335514407708type VI secretion protein  TssK
7M062_0041598758..99222 [-], 465514407709type VI secretion protein  TssJ
8M062_0042099267..100790 [-], 1524514412674signal peptide protein  Fha
9M062_00425101158..102192 [+], 1035514407710type VI secretion protein ImpA  TssA
10M062_00430102281..102799 [+], 519514407711hypothetical protein  TssB
11M062_00435102812..104308 [+], 1497514407712EvpB family type VI secretion protein  TssC
12M062_00440104384..104872 [+], 489514407713hypothetical protein  TssD
13M062_00445105040..105885 [+], 846514407714virulence protein, SciE type  TagJ
14M062_00450105887..106396 [+], 510514407715hypothetical protein  TssE
15M062_00455106393..108252 [+], 1860514407716type VI secretion system protein ImpG  TssF
16M062_00460108216..109262 [+], 1047514407717type VI secretion protein  TssG
17M062_00465109255..111963 [+], 2709514407718ATPase AAA  TssH
18M062_00470112001..113941 [+], 1941514407719type VI secretion protein ImpA  TssI
19M062_00475114055..114339 [-], 285514407720hypothetical protein  Tsi6 (i)
20M062_00480114336..115628 [-], 1293514412675hypothetical protein  Tse6 (e)
21M062_00485115644..116078 [-], 435514407721hypothetical protein 
22M062_00490116332..118557 [+], 2226514407722type VI secretion protein ImpA  TssI
23M062_00495118585..119034 [+], 450514412676hypothetical protein 
24M062_00500118964..120163 [+], 1200514407723hypothetical protein 
25M062_00505120160..121197 [+], 10385144077243-oxoacyl-ACP synthase 
26M062_00510121405..122145 [+], 741514412677hypothetical protein 
27M062_00515122156..123070 [+], 915514412678hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA0085 , PA0091, PA0095, PA1844, PA2684, PA2685, PA2702, PA2774, PA3484, PA0093

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M062_00440104384..104872 [+], 489514407713hypothetical protein PA0085
2M062_00470112001..113941 [+], 1941514407719type VI secretion protein ImpA PA0091
3M062_00490116332..118557 [+], 2226514407722type VI secretion protein ImpA PA0095
4M062_096452036013..2036477 [-], 465514409252hypothetical protein PA1844
5M062_142503107474..3111427 [-], 3954514409981hypothetical protein PA2684
6M062_142553111477..3113546 [-], 2070514409982type VI secretion protein ImpA PA2685
7M062_143353131244..3131720 [+], 477514409997hypothetical protein PA2702
8M062_147703202263..3202850 [-], 588514410057hypothetical protein PA2774
9M062_185803978709..3979935 [+], 1227514410704hypothetical protein PA3484
10M062_00480114336..115628 [-], 1293514412675hypothetical protein PA0093

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Proteins        Genes

Homology Immunity protein list
PA0092, PA1845, PA2703, PA2775, PA3485, Tsi5

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M062_00475114055..114339 [-], 285514407720hypothetical protein PA0092
2M062_096502036519..2037199 [-], 681514409253hypothetical protein PA1845
3M062_143403131730..3131963 [+], 234514409998hypothetical protein PA2703
4M062_147753202855..3203292 [-], 438514410058hypothetical protein PA2775
5M062_185853979932..3980369 [+], 438514410705hypothetical protein PA3485
6M062_142453107286..3107477 [-], 192514413131hypothetical protein Tsi5

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Proteins        Genes
N/A