SecReT6
I. Summary
SecReT6 ID813 insolico
StrainPseudomonas aeruginosa RP73
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021577
Location1862659..1881628
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M062_087951858419..1859054 [+], 636514409101hypothetical protein 
2M062_088001859105..1859581 [-], 477514409102MarR family transcriptional regulator 
3M062_088051859663..1860829 [+], 1167514409103GntR family transcriptional regulator 
4M062_088101860885..1861487 [+], 603514409104glutathione S-transferase 
5M062_088151862659..1864215 [+], 1557514409105type VI secretion protein ImpA  TssA
6M062_088201864251..1864757 [+], 507514409106hypothetical protein  TssB
7M062_088251864786..1866261 [+], 1476514409107type VI secretion protein  TssC
8M062_088301866274..1866681 [+], 408514409108hypothetical protein  TssE
9M062_088351867013..1868800 [+], 1788514409109type VI secretion protein  TssF
10M062_088401868764..1869771 [+], 1008514409110type VI secretion protein  TssG
11M062_088451869778..1872411 [+], 2634514409111ATPase AAA  TssH
12M062_088501872422..1873933 [+], 1512514409112Fis family transcriptional regulator  Sfa2
13M062_088551874022..1874162 [+], 141514409113type VI secretion protein 
14M062_088601874180..1875373 [+], 1194514409114signal peptide protein  Fha
15M062_088651875370..1875885 [+], 516514409115type VI secretion protein  TssJ
16M062_088701875882..1877213 [+], 1332514409116type VI secretion protein  TssK
17M062_088751877216..1878085 [+], 870514409117OmpA family protein  TssL
18M062_088801878101..1881628 [+], 3528514409118type VI secretion protein VasK  TssM
19M062_088851881628..1882356 [+], 729514409119protein phosphatase  Stp1
20M062_088901882353..1883342 [+], 990514409120serine/threonine protein kinase  Stk1
21M062_088951883370..1883750 [-], 381514409121hypothetical protein 
22M062_089001883996..1884457 [+], 462514409122hypothetical protein 
23M062_089051884522..1885067 [-], 546514409123GTP cyclohydrolase 
24M062_089101885145..1885702 [-], 558514409124DNA mismatch repair protein MutS 
25M062_089151885759..1886079 [-], 321514409125hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PSPTO_5435 , PSPTO_5435, PSPTO_5435

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M062_01295290901..291419 [-], 519514412689hypothetical protein PSPTO_5435
2M062_080851703029..1703547 [-], 519514412925hypothetical protein PSPTO_5435
3M062_277606009315..6009833 [-], 519514413382hypothetical protein PSPTO_5435

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Proteins        Genes
N/A
N/A