SecReT6
I. Summary
SecReT6 ID814 insolico
StrainPseudomonas aeruginosa RP73
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021577
Location2649983..2669944
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M062_122802645197..2646381 [-], 1185514409680monooxygenase 
2M062_122852646411..2647556 [-], 1146514409681alkanesulfonate monooxygenase 
3M062_122902647566..2648126 [-], 561514409682FMN reductase 
4M062_122952648286..2648552 [-], 267514413043hypothetical protein 
5M062_123002648788..2649873 [-], 1086514409683Fis family transcriptional regulator  Sfa3
6M062_123052649983..2651083 [-], 1101514409684type VI secretion protein  TssA
7M062_123102651080..2654895 [-], 3816514409685type VI secretion system protein ImpL  TssM
8M062_123152654892..2655650 [-], 759514413044type VI secretion system protein ImpK  TssL
9M062_123202655668..2656960 [-], 1293514413045type VI secretion protein  TssK
10M062_123252657059..2657535 [-], 477514409686type VI secretion protein 
11M062_123302657744..2658289 [+], 546514409687type VI secretion protein  TssB
12M062_123352658312..2659796 [+], 1485514409688EvpB family type VI secretion protein  TssC
13M062_123402659870..2660367 [+], 498514409689hypothetical protein  TssD
14M062_123452660380..2660805 [+], 426514409690type VI secretion protein  TssE
15M062_123502660789..2662582 [+], 1794514409691type VI secretion system protein ImpG  TssF
16M062_123552662546..2663562 [+], 1017514409692type VI secretion protein  TssG
17M062_123602663564..2666113 [+], 2550514409693ATPase  TssH
18M062_123652666204..2667079 [+], 876514413046hypothetical protein 
19M062_123702667149..2667934 [+], 786514413047hypothetical protein 
20M062_123752667941..2669944 [+], 2004514409694type IV secretion protein Rhs  TssI
21M062_123802669955..2670491 [+], 537514409695hypothetical protein 
22M062_123852670514..2670909 [-], 396514409696hypothetical protein 
23M062_123902671186..2671827 [+], 642514409697transcriptional regulator 
24M062_123952671959..2673233 [+], 1275514409698ABC transporter permease 
25M062_124002673240..2673353 [+], 114514413048hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
PA5089

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M062_267905796270..5798507 [-], 2238514412207hypothetical protein PA5089

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Proteins        Genes
N/A
N/A