SecReT6
I. Summary
SecReT6 ID815 insolico
StrainSorangium cellulosum So0157-2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021658
Location8611519..8636680
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SCE1572_302908607938..8609062 [-], 1125521459472hypothetical protein 
2SCE1572_302958609047..8610201 [-], 1155521465251hypothetical protein 
3SCE1572_303008610756..8611346 [-], 591521465252hypothetical protein 
4SCE1572_303058611519..8613003 [-], 1485521459473type VI secretion protein  TssC
5SCE1572_303108613007..8613498 [-], 492521459474hypothetical protein  TssB
6SCE1572_303158613517..8613651 [-], 135521465253hypothetical protein 
7SCE1572_303208613678..8615360 [-], 1683521465254hypothetical protein  TssA
8SCE1572_303258615480..8616499 [-], 1020521465255hypothetical protein 
9SCE1572_303308616790..8620506 [-], 3717521465256hypothetical protein  TssM
10SCE1572_303358620549..8621226 [-], 678521465257hypothetical protein  TssL
11SCE1572_303408621261..8622622 [-], 1362521465258hypothetical protein  TssK
12SCE1572_303458622772..8623563 [-], 792521465259hypothetical protein  TssJ
13SCE1572_303508623627..8626326 [-], 2700521459475ATPase AAA  TssH
14SCE1572_303558626364..8628229 [-], 1866521465260hypothetical protein 
15SCE1572_303608629933..8630499 [+], 567521465261hypothetical protein 
16SCE1572_303658630717..8631634 [-], 918521465262hypothetical protein 
17SCE1572_303708632161..8632640 [+], 480521465263hypothetical protein  TssD
18SCE1572_303758632920..8633270 [+], 351521465264hypothetical protein  TssD
19SCE1572_303808633318..8633740 [+], 423521465265hypothetical protein  TssE
20SCE1572_303858633814..8635583 [+], 1770521465266hypothetical protein  TssF
21SCE1572_303908635547..8636680 [+], 1134521465267hypothetical protein  TssG
22SCE1572_303958636701..8637381 [-], 681521465268hypothetical protein 
23SCE1572_304008637550..8638254 [+], 705521465269hypothetical protein 
24SCE1572_304058640295..8640564 [+], 270521465270hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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