SecReT6
I. Summary
SecReT6 ID817 insolico
StrainAcinetobacter baumannii BJAB0868
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021729
Location1490989..1510400
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJAB0868_014051486869..1487750 [-], 882523526698ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
2BJAB0868_014061487750..1488694 [-], 945523526699ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
3BJAB0868_014071488790..1489191 [-], 402523526700hypothetical protein 
4BJAB0868_014081490280..1490972 [+], 693523526701hypothetical protein 
5BJAB0868_014091490989..1491492 [+], 504523526702hypothetical protein  TssB
6BJAB0868_014101491485..1492966 [+], 1482523526703hypothetical protein  TssC
7BJAB0868_014111493016..1493519 [+], 504523526704Hemolysin-coregulated protein (uncharacterized)  TssD
8BJAB0868_014121493599..1494075 [+], 477523526705hypothetical protein  TssE
9BJAB0868_014131494092..1495903 [+], 1812523526706hypothetical protein  TssF
10BJAB0868_014141495867..1496865 [+], 999523526707hypothetical protein  TssG
11BJAB0868_014151496862..1498274 [+], 1413523526708hypothetical protein 
12BJAB0868_014161498305..1502129 [+], 3825523526709hypothetical protein  TssM
13BJAB0868_014171502167..1503126 [+], 960523526710hypothetical protein 
14BJAB0868_014181503129..1503896 [+], 768523526711Outer membrane protein-related peptidoglycan-associated (lipo)protein  TagL
15BJAB0868_014191503913..1504176 [+], 264523526712hypothetical protein  PAAR
16BJAB0868_014201504396..1507077 [+], 2682523526713ATPases with chaperone activity, ATP-binding subunit  TssH
17BJAB0868_014211507101..1508195 [+], 1095523526714hypothetical protein  TssA
18BJAB0868_014221508212..1509576 [+], 1365523526715hypothetical protein  TssK
19BJAB0868_014231509594..1510400 [+], 807523526716hypothetical protein  TssL
20BJAB0868_014241510413..1511015 [+], 603523526717hypothetical protein 
21BJAB0868_014251511023..1511976 [+], 954523526718hypothetical protein 
22BJAB0868_014261511979..1512830 [-], 852523526719Transcriptional regulator 
23BJAB0868_014271512982..1513650 [+], 669523526720Ankyrin repeat protein 
24BJAB0868_014281513666..1514148 [+], 483523526721Cytosine/adenosine deaminase 
25BJAB0868_014291514148..1515326 [+], 1179523526722Cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BJAB0868_014111493016..1493519 [+], 504523526704Hemolysin-coregulated protein (uncharacterized) A1S_1296

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Proteins        Genes
N/A
N/A