SecReT6
I. Summary
SecReT6 ID818 insolico
StrainAcinetobacter baumannii BJAB0715
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021733
Location1542497..1574218
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BJAB0715_014621538955..1539977 [+], 1023523530583ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component 
2BJAB0715_014631540029..1540910 [-], 882523530584ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
3BJAB0715_014641540910..1541854 [-], 945523530585ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
4BJAB0715_014651541950..1542351 [-], 402523530586hypothetical protein 
5BJAB0715_014661542497..1545127 [+], 2631523530587hypothetical protein  TssI
6BJAB0715_014671545124..1546062 [+], 939523530588hypothetical protein 
7BJAB0715_014681546067..1548142 [+], 2076523530589hypothetical protein 
8BJAB0715_014691548194..1548820 [+], 627523530590hypothetical protein 
9BJAB0715_014701548822..1549598 [+], 777523530591hypothetical protein 
10BJAB0715_014711549602..1550078 [+], 477523530592hypothetical protein 
11BJAB0715_014721550092..1550385 [+], 294523530593hypothetical protein 
12BJAB0715_014731550389..1551171 [+], 783523530594hypothetical protein 
13BJAB0715_014741551188..1551523 [+], 336523530595hypothetical protein 
14BJAB0715_014751551613..1552092 [+], 480523530596TPR repeat, SEL1 subfamily protein 
15BJAB0715_014761552351..1552494 [-], 144523530597hypothetical protein 
16BJAB0715_014771552607..1552894 [-], 288523530598hypothetical protein 
17BJAB0715_014781552991..1553356 [-], 366523530599hypothetical protein 
18BJAB0715_014791554099..1554791 [+], 693523530600hypothetical protein 
19BJAB0715_014801554808..1555311 [+], 504523530601hypothetical protein  TssB
20BJAB0715_014811555304..1556785 [+], 1482523530602hypothetical protein  TssC
21BJAB0715_014821556835..1557338 [+], 504523530603Hemolysin-coregulated protein (uncharacterized)  TssD
22BJAB0715_014831557418..1557894 [+], 477523530604hypothetical protein  TssE
23BJAB0715_014841557911..1559722 [+], 1812523530605hypothetical protein  TssF
24BJAB0715_014851559686..1560684 [+], 999523530606hypothetical protein  TssG
25BJAB0715_014861560681..1562093 [+], 1413523530607hypothetical protein 
26BJAB0715_014871562124..1565948 [+], 3825523530608hypothetical protein  TssM
27BJAB0715_014881565986..1566945 [+], 960523530609hypothetical protein 
28BJAB0715_014891566948..1567715 [+], 768523530610Outer membrane protein-related peptidoglycan-associated (lipo)protein  TagL
29BJAB0715_014901567732..1567995 [+], 264523530611hypothetical protein  PAAR
30BJAB0715_014911568214..1570895 [+], 2682523530612ATPases with chaperone activity, ATP-binding subunit  TssH
31BJAB0715_014921570919..1572013 [+], 1095523530613hypothetical protein  TssA
32BJAB0715_014931572030..1573394 [+], 1365523530614hypothetical protein  TssK
33BJAB0715_014941573412..1574218 [+], 807523530615hypothetical protein  TssL
34BJAB0715_014951574231..1574833 [+], 603523530616hypothetical protein 
35BJAB0715_014961574841..1575794 [+], 954523530617hypothetical protein 
36BJAB0715_014971575797..1576648 [-], 852523530618Transcriptional regulator 
37BJAB0715_014981576800..1577468 [+], 669523530619Ankyrin repeat protein 
38BJAB0715_014991577484..1577969 [+], 486523530620Cytosine/adenosine deaminase 
39BJAB0715_015001577969..1579147 [+], 1179523530621Cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BJAB0715_014821556835..1557338 [+], 504523530603Hemolysin-coregulated protein (uncharacterized) A1S_1296

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Proteins        Genes
N/A
N/A