SecReT6
I. Summary
SecReT6 ID819 insolico
StrainRalstonia solanacearum FQY_4
Repliconmegaplasmid [Browse all T6SS(s) in this replicon]
AccessionNC_021745
Location1235965..1282335
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111311111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1F504_44471232840..1233121 [-], 282525711913putative signal peptide protein 
2F504_44481233239..1234282 [-], 1044525711914hypothetical protein 
3F504_44491234279..1235949 [-], 1671525711915hypothetical protein 
4F504_4450 (vgrG)1235965..1238985 [-], 3021525711916VgrG protein  TssI
5F504_44511239123..1239851 [-], 729525711917putative transmembrane protein 
6F504_44521240156..1241004 [+], 849525711918putative transmembrane protein 
7F504_44531241044..1241313 [+], 270525711919hypothetical protein  PAAR
8F504_44541241324..1242811 [+], 1488525711920hypothetical protein 
9F504_44551242849..1246778 [+], 3930525711921IcmF-related protein  TssM
10F504_44561246775..1247761 [+], 987525711922hypothetical protein 
11F504_44571247764..1248597 [+], 834525711923Outer membrane protein  TagL
12F504_44581248666..1249664 [+], 999525711924putative transmembrane protein 
13F504_4459 (impA)1249737..1250750 [-], 1014525711925Uncharacterized protein ImpA  TssA
14F504_44601250950..1252293 [-], 1344525712617lipoprotein yddw 
15F504_44611252349..1253041 [-], 693525711926hypothetical protein 
16F504_44621253046..1253423 [-], 378525711927hypothetical protein 
17F504_44631254610..1255398 [-], 789525711928Hypothetical Protein 
18F504_44641255480..1256265 [-], 786525711929Hypothetical Protein 
19F504_44651256423..1257409 [-], 987525711930Mobile element protein 
20F504_44661258286..1258447 [-], 162525711931hypothetical protein 
21F504_44671258418..1259725 [+], 1308525711932Mobile element protein 
22F504_44681259797..1260621 [+], 825525711933Mobile element protein 
23F504_44691260595..1262928 [-], 2334525711934hypothetical protein 
24F504_44701262906..1264060 [-], 1155525711935hypothetical protein 
25F504_4471 (vgrG)1264057..1266813 [-], 2757525711936VgrG protein  TssI
26F504_4472 (clpB)1266834..1269551 [-], 2718525711937ClpB protein  TssH
27F504_44731269584..1270642 [-], 1059525711938Uncharacterized protein ImpH/VasB  TssG
28F504_44741270639..1272489 [-], 1851525711939Protein ImpG/VasA  TssF
29F504_4475 (impF)1272552..1273025 [-], 474525711940Uncharacterized protein ImpF  TssE
30F504_44761273086..1273589 [-], 504525711941Hypothetical Protein  TssD
31F504_4477 (impC)1273678..1275168 [-], 1491525711942Uncharacterized protein ImpC  TssC
32F504_4478 (impB)1275161..1275673 [-], 513525711943Uncharacterized protein ImpB  TssB
33F504_44791275710..1276357 [-], 648525711944TPR repeat protein 
34F504_44801276725..1277306 [+], 582525711945Type VI secretion lipoprotein/VasD  TssJ
35F504_44811277350..1278696 [+], 1347525711946Uncharacterized protein ImpJ/VasE  TssK
36F504_44821278693..1279484 [+], 792525711947putative transmembrane protein  TssL
37F504_44831279543..1282335 [+], 2793525711948VgrG protein  TssI
38F504_44841282332..1283906 [+], 1575525711949hypothetical protein 
39F504_44851285005..1285922 [+], 918525711950hypothetical protein 
40F504_44861285941..1286828 [+], 888525711951hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
RSp0745

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1F504_44761273086..1273589 [-], 504525711941Hypothetical Protein RSp0745

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Proteins        Genes
N/A
N/A