SecReT6
I. Summary
SecReT6 ID823 insolico
StrainSalmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021818
Location1317008..1356990
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1CFSAN002050_07840 (mltD)1312267..1313634 [-], 1368525856663membrane protein 
2CFSAN002050_078451313706..1314461 [-], 756525856664hydroxyacylglutathione hydrolase 
3CFSAN002050_078501314496..1315218 [+], 723525856665hypothetical protein 
4CFSAN002050_078551315215..1315682 [-], 468525856666ribonuclease H 
5CFSAN002050_078601315737..1316477 [+], 741525856667DNA polymerase III subunit epsilon 
6CFSAN002050_078701316810..1316917 [+], 108525859642hypothetical protein 
7CFSAN002050_078751317008..1318063 [-], 1056525856668hypothetical protein  TssA
8CFSAN002050_078801318074..1319069 [-], 996525856669SPI-6 associated protein  TssG
9CFSAN002050_078851319066..1320949 [-], 1884525859643type VI secretion protein  TssF
10CFSAN002050_078901320965..1321459 [-], 495525856670cytoplasmic protein  TssE
11CFSAN002050_078951321456..1322280 [-], 825525856671hypothetical protein  TagJ
12CFSAN002050_079001322267..1323169 [-], 903525856672hypothetical protein 
13CFSAN002050_079051323537..1326176 [+], 2640525856673protein disaggregation chaperone  TssH
14CFSAN002050_079101326276..1326818 [+], 543525856674type VI secretion protein  TssB
15CFSAN002050_079151326842..1328350 [+], 1509525856675EvpB family type VI secretion protein  TssC
16CFSAN002050_079201329236..1329721 [+], 486525856676Hcp1 family type VI secretion system effector  TssD
17CFSAN002050_079251330025..1330510 [+], 486525856677hypothetical protein  STM0277 (e)
18CFSAN002050_079301330495..1330878 [+], 384525856678hypothetical protein  STM0278 (i)
19CFSAN002050_079351331021..1331506 [+], 486525856679Hcp1 family type VI secretion system effector  TssD
20CFSAN002050_079401331573..1332109 [+], 537525856680outer membrane lipoprotein  TssJ
21CFSAN002050_079451332113..1333456 [+], 1344525856681type VI secretion protein  TssK
22CFSAN002050_079501333453..1334757 [+], 1305525856682membrane protein  TssL
23CFSAN002050_079551334762..1335535 [+], 774525859644membrane protein 
24CFSAN002050_079601335726..1336169 [+], 444525856683Shiga toxin A subunit 
25CFSAN002050_079651336203..1340072 [+], 3870525856684membrane protein  TssM
26CFSAN002050_079701340072..1340839 [+], 768525856685hypothetical protein 
27CFSAN002050_079751340882..1341352 [+], 471525859645hypothetical protein 
28CFSAN002050_079801341985..1342716 [+], 732525859646hypothetical protein 
29CFSAN002050_079851342806..1343147 [+], 342525859647hypothetical protein 
30CFSAN002050_079901344179..1346398 [+], 2220525856686type VI secretion protein Vgr  TssI
31CFSAN002050_079951346429..1346860 [+], 432525859648hypothetical protein 
32CFSAN002050_080001346891..1351390 [+], 4500525859649sugar-binding protein  PAAR
33CFSAN002050_080051351380..1351814 [+], 435525859650hypothetical protein 
34CFSAN002050_080101352348..1352494 [+], 147525859651hypothetical protein 
35CFSAN002050_080151352585..1352971 [+], 387525859652hypothetical protein 
36CFSAN002050_080201353278..1353400 [+], 123525859653hypothetical protein 
37CFSAN002050_080251353427..1353813 [+], 387525859654hypothetical protein 
38CFSAN002050_080301353840..1354358 [+], 519525859655SPI-6 associated protein 
39CFSAN002050_080351354756..1356990 [+], 2235525856687type VI secretion protein Vgr  TssI
40CFSAN002050_080401357050..1357508 [+], 459525859656hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EvpC , STM0277, EvpC, ROD_34191, STY2606

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CFSAN002050_079201329236..1329721 [+], 486525856676Hcp1 family type VI secretion system effector EvpC
2CFSAN002050_079251330025..1330510 [+], 486525856677hypothetical protein STM0277
3CFSAN002050_079351331021..1331506 [+], 486525856679Hcp1 family type VI secretion system effector EvpC
4CFSAN002050_226004346566..4347051 [-], 486525858886hypothetical protein ROD_34191
5CFSAN002050_188053538967..3539185 [+], 219525860088hypothetical protein STY2606

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Proteins        Genes

Homology Immunity protein list
STM0278, STY2607

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1CFSAN002050_079301330495..1330878 [+], 384525856678hypothetical protein STM0278
2CFSAN002050_188103539185..3539703 [+], 519525858366hypothetical protein STY2607

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Proteins        Genes
N/A