SecReT6
I. Summary
SecReT6 ID824 insolico
StrainSalmonella enterica subsp. enterica serovar Typhimurium str. 08-1736
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_021820
Location1593099..1620481
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SE451236_07320 (mltD)1588357..1589724 [-], 1368526219197membrane protein 
2SE451236_073251589796..1590551 [-], 756526219198hydroxyacylglutathione hydrolase 
3SE451236_073301590586..1591308 [+], 723526219199hypothetical protein 
4SE451236_073351591305..1591772 [-], 468526219200ribonuclease H 
5SE451236_073401591827..1592567 [+], 741526219201DNA polymerase III subunit epsilon 
6SE451236_073501593099..1594154 [-], 1056526219202hypothetical protein  TssA
7SE451236_073551594165..1595160 [-], 996526219203SPI-6 associated protein  TssG
8SE451236_073601595157..1597040 [-], 1884526221961type VI secretion protein  TssF
9SE451236_073651597056..1597550 [-], 495526219204cytoplasmic protein  TssE
10SE451236_073701597547..1598371 [-], 825526219205hypothetical protein  TagJ
11SE451236_073751598358..1599260 [-], 903526219206hypothetical protein 
12SE451236_073801599628..1602267 [+], 2640526219207protein disaggregation chaperone  TssH
13SE451236_073851602367..1602909 [+], 543526219208type VI secretion protein  TssB
14SE451236_073901602933..1604426 [+], 1494526219209EvpB family type VI secretion protein  TssC
15SE451236_073951605312..1605797 [+], 486526219210Hcp1 family type VI secretion system effector  TssD
16SE451236_074001606102..1606587 [+], 486526219211hypothetical protein  STM0277 (e)
17SE451236_074051606572..1606955 [+], 384526219212hypothetical protein  STM0278 (i)
18SE451236_074101607098..1607583 [+], 486526219213Hcp1 family type VI secretion system effector  TssD
19SE451236_074151607650..1608186 [+], 537526219214outer membrane lipoprotein  TssJ
20SE451236_074201608190..1609533 [+], 1344526219215type VI secretion protein  TssK
21SE451236_074251609530..1610834 [+], 1305526219216membrane protein  TssL
22SE451236_074301610839..1611612 [+], 774526221962membrane protein 
23SE451236_074351611803..1612246 [+], 444526219217Shiga toxin A subunit 
24SE451236_074401612280..1616149 [+], 3870526219218membrane protein  TssM
25SE451236_074451616149..1616937 [+], 789526219219hypothetical protein 
26SE451236_074501616964..1617350 [+], 387526221963hypothetical protein 
27SE451236_074551617377..1617895 [+], 519526221964SPI-6 associated protein 
28SE451236_074601618292..1620481 [+], 2190526219220type VI secretion protein Vgr  TssI
29SE451236_074651620505..1620951 [+], 447526219221hypothetical protein 
30SE451236_074701620970..1625064 [+], 4095526221965type IV secretion protein Rhs  PAAR
31SE451236_074751625058..1625321 [+], 264526221966hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EvpC , STM0277, EvpC, ROD_34191, STY2606

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SE451236_073951605312..1605797 [+], 486526219210Hcp1 family type VI secretion system effector EvpC
2SE451236_074001606102..1606587 [+], 486526219211hypothetical protein STM0277
3SE451236_074101607098..1607583 [+], 486526219213Hcp1 family type VI secretion system effector EvpC
4SE451236_217754544707..4545192 [-], 486526221496hypothetical protein ROD_34191
5SE451236_180803773994..3774362 [+], 369526222349hypothetical protein STY2606

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Proteins        Genes

Homology Immunity protein list
STM0278, STY2607

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SE451236_074051606572..1606955 [+], 384526219212hypothetical protein STM0278
2SE451236_180853774362..3774880 [+], 519526220918hypothetical protein STY2607

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Proteins        Genes
N/A