SecReT6
I. Summary
SecReT6 ID825 insolico
StrainVibrio parahaemolyticus O1:Kuk str. FDA_R31
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021821
Location1495922..1517981
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M634_230351493545..1494678 [-], 1134525848283exonuclease SbcD 
2M634_230401494775..1495617 [-], 843525848284hypothetical protein 
3M634_230451495618..1495908 [-], 291525848760type VI secretion protein  PAAR
4M634_230501495922..1497757 [-], 1836525848285type IV secretion protein Rhs  TssI
5M634_230551497815..1498294 [-], 480525848286hemolysin D  TssD
6M634_230601498500..1501067 [-], 2568525848287ATPase  TssH
7M634_230651501078..1502043 [-], 966525848288type VI secretion protein  TssG
8M634_230701502040..1503863 [-], 1824525848289type VI secretion system protein ImpG  TssF
9M634_230751503860..1504324 [-], 465525848290lysozyme  TssE
10M634_230801504333..1505130 [-], 798525848291protein of avirulence locus ImpE  TagJ
11M634_230851505141..1506661 [-], 1521525848292type VI secretion protein  TssC
12M634_230901506708..1508201 [-], 1494525848293EvpB family type VI secretion protein  TssC
13M634_230951508201..1508731 [-], 531525848294type VI secretion protein  TssB
14M634_231001508747..1509868 [-], 1122525848295type VI secretion protein  TssA
15M634_231051509865..1510653 [-], 789525848296serine/threonine protein phosphatase 
16M634_231101510664..1511359 [-], 696525848297type VI secretion system protein ImpM 
17M634_231151511341..1514859 [-], 3519525848298type VI secretion protein IcmF  TssM
18M634_231201514875..1516167 [-], 1293525848761flagellar motor protein  TssL
19M634_231251516179..1517504 [-], 1326525848299type VI secretion protein  TssK
20M634_231301517526..1517981 [-], 456525848300type VI secretion lipoprotein/VasD  TssJ
21M634_231351517991..1519187 [-], 1197525848301signal peptide protein  Fha
22M634_231401519186..1519353 [+], 168525848762hypothetical protein 
23M634_231451519510..1521651 [+], 2142525848763serine/threonine protein kinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M634_230551497815..1498294 [-], 480525848286hemolysin D VPA1027

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Proteins        Genes
N/A
N/A