SecReT6
I. Summary
SecReT6 ID826 insolico
StrainVibrio parahaemolyticus O1:K33 str. CDC_K4557
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_021822
Location994207..1016265
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1101
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1M636_04510991830..992963 [-], 1134525853562exonuclease SbcD 
2M636_04515993060..993902 [-], 843525853563hypothetical protein 
3M636_04520993903..994193 [-], 291525854369type VI secretion protein  PAAR
4M636_04525994207..996042 [-], 1836525853564type IV secretion protein Rhs  TssI
5M636_04530996100..996579 [-], 480525853565hemolysin D  TssD
6M636_04535996785..999352 [-], 2568525853566ATPase  TssH
7M636_04540999363..1000328 [-], 966525853567type VI secretion protein  TssG
8M636_045451000325..1002148 [-], 1824525853568type VI secretion system protein ImpG  TssF
9M636_045501002145..1002609 [-], 465525853569lysozyme  TssE
10M636_045551002618..1003415 [-], 798525853570protein of avirulence locus ImpE  TagJ
11M636_045601003426..1004946 [-], 1521525853571type VI secretion protein  TssC
12M636_045651004993..1006486 [-], 1494525853572EvpB family type VI secretion protein  TssC
13M636_045701006486..1007016 [-], 531525853573type VI secretion protein  TssB
14M636_045751007032..1008153 [-], 1122525853574type VI secretion protein  TssA
15M636_045801008150..1008938 [-], 789525853575serine/threonine protein phosphatase 
16M636_045851008949..1009644 [-], 696525853576type VI secretion system protein ImpM 
17M636_045901009626..1013144 [-], 3519525853577type VI secretion protein IcmF  TssM
18M636_045951013160..1014452 [-], 1293525854370flagellar motor protein  TssL
19M636_046051015810..1016265 [-], 456525853578type VI secretion lipoprotein/VasD  TssJ
20M636_046101016275..1017471 [-], 1197525853579signal peptide protein  Fha
21M636_046151017470..1017637 [+], 168525854371hypothetical protein 
22M636_046201017794..1019935 [+], 2142525854372serine/threonine protein kinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
VPA1027

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1M636_04530996100..996579 [-], 480525853565hemolysin D VPA1027

Download FASTA format files
Proteins        Genes
N/A
N/A